K06139

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06139

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06139

Determination of introduced cDNA(s)

  • J023141I08 - Rice Full-length cDNAs - Original: J023141I08

    full reading [+] show sequence

    Nucleotide sequence: J023141I08 - full reading 
    GGGTTTCGTT TCCTTCCTTC TTCTCCTCCT CCTCCTTCTC CCAATCGATC 
    GCATTCGAAG CTTCCTCCGG TAGCTCCGGT GAGGGTGATG GACGACCTGG 
    ACATGGCGCT GCCTCAGGCC TTCGAGCTCC TCCTCGGCAG AGATCGAGAC 
    GCCTGGCCGC GCGGGGGCCG CGTTCCTCGT CGCCGCCCAC TACGGGGACG 
    TCCGCGAAAT GAAGAGGATT GCAAAGGAGC TGGACGAGGA CGGCAAAGGG 
    ATCGAGGCGA CTGTGGCTAA CACAAGCTTC CTCGGCATGA ACGCCCTTCA 
    CGCACTGGGT TGGCTCGGCA AGGTGCCGGC CTACCGGTAT CTGGTAGAGG 
    AGGTCAAAAT GGACGTCAAC AAGGCCGACA CTGCTCAGGG ATTCACACCC 
    CTGGAGCATG CCGTCTACCA TGGTCGCCTG CCTGCCACCA GATACCTCCT 
    TGATCATGGC GCTGATGTGC ATCAAATTCG CTCTACGGGA AATGTCTCTC 
    TTCTTCACTC AGCTGCAGTA AAAGGGTTCT CTGAAGTAGC AAAATTTCTG 
    CTTTCTAGAG GAGTTAATGT TGATGCAGAA TCAGAAATGG GGACACCACT 
    GGCTCTTGCT GCTTTCAGAG GATATGATAG CACTGTCAAG GTCCTTTTGG 
    AGCACAATGC TGATCCCAAC AAGGTTACAA ACCAAGGCAC TTGGTGCACC 
    TTTAGACTTG GCATTAACCA GCTCTTCTGT GTCCTGTGTG AAGCTGTTGG 
    TTCAGGCTGG AGCTGAAGTG AAAGTTGAGG GGCCAAATAA TCATTTGGTA 
    AGAGCTGCTG AGAAAGGCTT AACTGAAGCT ATTAAATGCA TGTTGGAAGC 
    TGGTGCAAAC CCAAATGTTC CTGACAGGCT CGGGAGAATG CCAATAGAGC 
    TGGCTGCTGA GTATGGCACA CGGGAAGATG TTGAGATTCT CTTTCCTTTC 
    AGCTCTGCTA TTCCAACTGT GGCAAATTGG AGTGTTGATG GAATAATTAA 
    TCATGTACAG TCAGAAATCA AGCAACTAGA GGACGATAAT TTTATCCAAA 
    AGAGAAGGTC TGACATGAAA CAACAAGGGG ATGCTGCATT TAAGAAGCAG 
    GATTATCTAA ATGCATCAGT GTTCTACACT CAGGCACTGA AGGTTGATCC 
    GTTTGATGGC ACGTTGTTCT CAAACAGGAG TCTTTGCTGG CTCCGCATGG 
    GTGATGGAGA AAGGGCTTTG GATGATGCCC ATGCATGCGA AAAGCTACGG 
    CCCAAAGTGG GCAAAGTCCT ACTATCGGCA AGGAGCAGCT CTAATGTTTC 
    TGAAGGAGTA TGAGAGGGCT CATAGGGCAC TTGGTCGAGC TTTAGAGTTG 
    GACCCTGAAA GTGAAGAGAT CGAGAATTTG TATTGGGAGT CGATGGAACT 
    GTGCGGTTGA TCCCTGAAAT GCCAGCTACA GATAGAAGAA GCACACGCAG 
    AACTGGAAGC TCCTTTTGTG TTATGAAAGA TGGAACGACG CAAACGCTCA 
    GTGATTTGCT GCTTTTTGTG TACATATACT TAGGCTGTCA AAACAGAAAC 
    AAATGTCTGG TCTTTTATGT CGTGTTTCGT CGTGACATCT TCCTGGAGTG 
    GCTGTTAGAC TAAACTAGCA TTATCACATT CTATCTGTTG CTAGTATGGG 
    CAGAGGATGA TCAACTGTCT AAGCAAGCTG GAATGATATG AATTCTCTGA 
    AATGTTATGC ATAATATAAT TGTG

    Gene models with high sequence identity

    1. AT3G04710.3 [+] show detail - ankyrin repeat family protein
      E-value: 4e-70; Score: 40.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily TPR-like 2e-07
    superfamily Ankyrin repeat-containing domain 9.7e-30
    superfamily Ankyrin repeat-containing domain 5.3e-15
    superfamily TPR-like 7.1e-12
    HMMPfam Tetratricopeptide TPR2 2.7e-07
    HMMPfam Ankyrin repeat 7.8e-06
    HMMPfam Ankyrin repeat 5.4e-07
    Gene3D Tetratricopeptide-like helical 9.6e-06
    Gene3D Ankyrin repeat-containing domain 3.5e-25
    Gene3D Ankyrin repeat-containing domain 2.8e-11
    Gene3D Tetratricopeptide-like helical 9.9e-13
    ProfileScan Tetratricopeptide repeat 11.358
    ProfileScan Tetratricopeptide repeat-containing 12.158
    ProfileScan Ankyrin repeat 11.461
    ProfileScan Ankyrin repeat 10.526
    ProfileScan Ankyrin repeat 9.912
    ProfileScan Ankyrin repeat-containing domain 25.727
    ProfileScan Tetratricopeptide repeat-containing 9.362
    ProfileScan Ankyrin repeat-containing domain 13.204
    HMMSmart Tetratricopeptide repeat 0.0047
    HMMSmart Ankyrin repeat 4000
    HMMSmart Ankyrin repeat 0.00014
    HMMSmart Ankyrin repeat 0.11
    HMMSmart Ankyrin repeat 0.19
    HMMPanther gb def: Putative ankyrin 5.5e-27
    HMMPanther TPR REPEAT CONTAINING PROTEIN 5.5e-27
    HMMPanther SERINE/THREONINE-PROTEIN KINASE RIPK4 4.3e-16
    HMMPanther ANKYRIN REPEAT-CONTAINING 4.3e-16
    HMMPanther STRESS-INDUCED-PHOSPHOPROTEIN 1 (STI1) (HSC70 4e-08
    HMMPanther TPR REPEAT CONTAINING PROTEIN 4e-08

    See the detailed result >

    AT3G04710.3

    Model type
    Protein coding
    Short Description
    ankyrin repeat family protein
    Computational Description
    ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Tetratricopeptide-like helical (InterPro:IPR011990), Ankyrin repeat-containing domain (InterPro:IPR020683), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT3G04700.1).
    Link
    InterPro Scan - TAIR