K06132

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06132

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06132

Determination of introduced cDNA(s)

  • J013119O04 - Rice Full-length cDNAs - Original: J013119O04

    full reading [+] show sequence

    Nucleotide sequence: J013119O04 - full reading 
    GTCTTGCCTC AAGTCCCTCA ACAAACGAAC GCTGCTTTTC GACGAAGAAA 
    AGGAGGGTTC CTCGCTCTGA CGCCTTGCGC AGTTGTACCG TACATTCGTA 
    CTACCACACA GCTTGAAGAA GAAGAGGGAA TTCGACGAGA AATAGTAGAA 
    GCTTGGCGTT CGTGCGAGGA ATTCTCGGTG GTTGATCGAT CCGTGTTTCG 
    CGGCGGATGG GGCAGGCGTT CCGCAAGCTG TTCGATGCCT TCTTCGGCAC 
    CAGCGAGATG AGGGTCGTGA TGCTTGGGCT GGATGCCGCG GGCAAAACCA 
    CCATCCTGTA CAAGCTGCAC ATCGGGGAGG TCCTTTCGAC TGTTCCTACG 
    ATTGGGTTCA ATGTTGAGAA AGTACAGTAC AAGAACGTGA TGTTTACAGT 
    ATGGGATGTC GGTGGCCAAG AGAAGTTGAG GCCTCTGTGG AGGCATTACT 
    TCAATAATAC GGATGGTTTG GTATGTTTTG TTTCCTTTGT GGTTATCTTT 
    TTGGGAATAC GTGAAAGATT TGTGCATCGT TGCATTAAAG AAGGAAAGAA 
    GTGGTTATTT GATTTTGACA GACTTGTGTA ATGATATAGT ATTATATAGC 
    CATTCTGCAT AGGTTATTGT GGTTGACTTT GAGACAAATA TTTCTTAGTT 
    TGACTTATTG GTTAAAGTTG TATGGCATGT ATGCAATTGT TTTATCCAAA 
    GTATCCATAA GGCTGGTGAG GTTGCTAGAT GATCCTTTGA ACATTTTTAA 
    TTAAAAAATT AAATGCATAC CAATATTGAT ACCGCAAATA TGTGTGTTTA 
    AAATCTATGG TAATTCGATT TGAATTTATG TGGAGTTATA GAACTCATTT 
    ATTTAAACAA TTATGATAGT GAGATAACCC AAATGAGTGG TATAGAATTT 
    CCCAGTTCTC TTTTAATTAA CATGAAAACT TACGGATCTA GAAGTACCCT 
    GTGCTTGGCA TACTATCTAT TTTCATGTAA TGGTATTGTA ATATAATATA 
    ATCATGCTTA ATTATCCAGT TAATGGATAA TGTTGTCGAG TTTGTCAGAT 
    CTTTCACTGT ATGAGATTAT AGCAATGTTT CTACTAATTC AACACTTAAT 
    GAATTGCTCT TTTGTTGATA CTGTAAATGA TATCTTTGCT TGATTTGATT 
    TGGTTTGATT TATTACAGCT GAACAGAGCC ATCTTTCCAG ATATAAGCTC 
    ATTCTGGATT ATTTTGTGCT ATATTACCTA ATGAAGTTAC TAATTAGCTA 
    ATGTTATGTC TATAATGTAA ACCATACTAC TCTTCAGTTA CTAATTAGAT 
    GATGCTCGTC AGTAAAACTT TATTCTATTT TCTTGTTGAT TTGTTTTCCT 
    TGAGAGATCG GCGTGATACT GAAATTCGGA TGTATTCATG AGCATACCCA 
    ACTACATTTA TAAATTGTAA TAGCAACTTA TTCCTATATG TTATTTTTGC 
    ACGTTCTGAT TTGCAGATCT ATGTAGTTGA TTCATTGGAT AGAGAGAGAA 
    TCGGAAAAGC GAAAGCGGAG TTTCAGGCAA TCGTTAATGA TCCTTTGATG 
    CTTAACAGTG TAATATTGGT ATTTGCCAAT AAACAAGATA TGAAAGGGGC 
    AATGACGCCG TTGGAGGTGT GCGAAGGCCT TGGCCTCTAT GATTTAAAGA 
    ATCGCATCTG GCATATCCAA GGCTCTTGTG CCCTCAAAGG TGATGGTCTT 
    TATGAGGGCT TGGACTGGTT GGCAAGTACT CTGAAGGGAC TGGAAGCCTC 
    AGGTCGCCTC CCCTCAGGAG GGACCTCATT GTTCTAAGTA GCAGGTCTGC 
    CTGTAAGATT CTTCCGTTGA CACTAACAAT CTTTGCATCA AAGATGATCA 
    TGGGAACAAA TTATCTTGGT GTGGAAGGCC TTACATGGTC ACACCTTACA 
    TTGCTCAGGC GATATGCTTC GCGGTGTCGA TTCTACTGAA GGCAAAAGAT 
    GCATGAGAGC CTGACTACTT GAAACATTAC CACTGCAGTT TTGTCATGGG 
    TAGTAGTGTA GTAGTACCCA TCGAGTCTTG TGAATTTCCT TGAATGTTAC 
    AGCTAACTAT CGGATGCATT TGTTCACATG TGATGAGTGA AACGCATGTT 
    GATGTAAAAA GTTTGTGTAA AGTTATGTTT G

    Gene models with high sequence identity

    1. AT5G17060.1 [+] show detail - ADP-ribosylation factor B1B
      E-value: 4e-45; Score: 180.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 2.6e-27
    superfamily P-loop containing nucleoside triphosphate hyd 1.1e-16
    ProfileScan ARF 9.866
    ProfileScan ARF 9.182
    HMMSmart ADP-ribosylation factor 3e-27
    HMMSmart ADP-ribosylation factor 2.4e-08
    HMMPanther ADP-RIBOSYLATION FACTOR, ARF 2.4e-48
    HMMPanther ARF/SAR superfamily 2.4e-48
    HMMPanther ADP-RIBOSYLATION FACTOR, ARF 3.5e-67
    HMMPanther ARF/SAR superfamily 3.5e-67
    Gene3D no description 3.8e-28
    Gene3D no description 1e-20
    HMMPfam ARF/SAR superfamily 7.4e-38
    HMMPfam ARF/SAR superfamily 4.6e-26
    FPrintScan ARF/SAR superfamily 2.7e-09
    FPrintScan ARF/SAR superfamily 2.7e-09
    FPrintScan ARF/SAR superfamily 2.7e-09

    See the detailed result >

    AT5G17060.1

    Model type
    Protein coding
    Short Description
    ADP-ribosylation factor B1B
    Curator Summary
    A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster), other ARFs and ARF-like proteins.
    Computational Description
    ADP-ribosylation factor B1B (ARFB1B); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor B1C (TAIR:AT3G03120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR