K05240

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05240

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05240

Determination of introduced cDNA(s)

  • J013152P20 - Rice Full-length cDNAs - Original: J013152P20

    full reading [+] show sequence

    Nucleotide sequence: J013152P20 - full reading 
    GAAGCAGACG AGCCCACGGC CGCCGACGCC GCCCGCCGCC GGACTTCGCC 
    GGAATTTCGC CATTCTGATA TAAATTAGTG CATTGCATCA GAAAAATGGT 
    TGTGGGGTTA ATAAATGCTA ACCCTGTAGT TTATGAGAAA AAAGAGAGGC 
    GTTCTCGGCA GGCACCAGAA ACCACAGATG AAAATGCGGC AGAGGCTATT 
    GACCAGCTAG AAATATTTGA TCATATTAGA GACATAAAGG ATCCAGAGCA 
    CCCATACTCA CTCGAAGAGC TTAATGTTGT AACTGAGGAT TCAGTTGAAA 
    TCAATGATGA ACTTAGTCAT GTCAGGGTTA CTTTTACCCC AACAGTGGAG 
    CGTTGCAGTA TGGCGACCGT CATTGGACTT TGCCTGCGTG TGAAACTTAT 
    GCGGAGTCTT CCCCCTCGAT ACAAGGTGGA CATAAGGGTG GCGCCTGGAT 
    CACATGCAAC TGAAACTGCA GTGAACAAGC AACTGAACGA CAAAGAACGT 
    GTTGCAGCTG CTCTGGAAAA TCCAAACCTT CTGGACATTG TTGAGGAGTG 
    CTTGTCACCA ACGTTTGCTT GAGACCTGAA TACAAGTATA CAACTGGGAG 
    CCTGTGTGTT GAAATGTTTC AAAACTACAC TGAATTACCC TACGACGTGT 
    AGCATGACCT TGTCATTTGA GATACCTTAT GTGGTGCAGG GCGTGTGCAT 
    GAATTTTGAT GGTCTGTACC TTTCTATAAG GATACTACTG CTCTACCGTT 
    TCATACCTTT TTTCTTTTTA TGGCCTGTGA CCTGCCAGAG CATAATTGAA 
    ACGATATAAG GAAATACTCG TATATGAAGT ATATTGCGCT GTAGGCTTTT 
    TACCTCTCGA ATATGAAGTA CTGTCTGGAT GTCAATATCC ATGAAAAGAA 
    ACTGAAGGAT ATTCCATGAT TTTATGCCAT CTCTGTAATT ATATCAGGTT 
    GCTCTTGAAC T

    Gene models with high sequence identity

    1. AT1G68310.2 [+] show detail - Protein of unknown function (DUF59)
      E-value: 3e-64; Score: 242.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF59 6.8e-16
    HMMPanther UNCHARACTERIZED 2.2e-76

    See the detailed result >

    AT1G68310.2

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF59)
    Curator Summary
    Encodes a protein that has been shown to specifically interact with a sequence motif, PIEPPPHH, in the cytoplasmic tail of a membrane protein that directs the protein from the ER to vacuoles where it is internalized.
    Computational Description
    FUNCTIONS IN: vacuolar sorting signal binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF59 (InterPro:IPR002744); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF59) (TAIR:AT3G50845.1); Has 563 Blast hits to 563 proteins in 217 species: Archae - 4; Bacteria - 0; Metazoa - 246; Fungi - 136; Plants - 85; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR