K05211

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05211

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05211

Determination of introduced cDNA(s)

  • J013162J02 - Rice Full-length cDNAs - Original: J013162J02

    full reading [+] show sequence

    Nucleotide sequence: J013162J02 - full reading 
    GAGGTCGTCT CCTCTCTCGT GTCTCCCCCC TGGCTCCCTT GGCTTTGGCT 
    CCGCTCCAGG CTCCAGCCGA GTACCCGCCT CCTCCTCCTC GCTCGCCGCG 
    GAATCTTCTG GAAGCTTCTA GATCCGGCCG CTACGATCGG CGAAGAAGGG 
    ATGGGGCAGG CCTTCCGCAA GCTCTTCGAC GCCTTCTTCG GCAACAAGGA 
    GATGCGGGTG GTGATGCTTG GGCTAGATGC CGCGGGGAAG ACCACCATAC 
    TCTATAAGCT GCACATCGGC GAAGTTCTCT CCACCGTCCC CACTATAGGC 
    TTCAACGTGG AGAAAGTTCA ATACAAGAAT GTGGTGTTCA CTGTGTGGGA 
    TGTTGGTGGC CAGGAAAAAT TGAGGCCCTT ATGGAGGCAC TACTTCAACA 
    ACACCGATGC TCTGATCTAC GTAGTTGATT CCCTGGATAG AGAGAGGATT 
    GGGAGAGCCA GAGCTGAATT TCAGGCCATT ATTAATGACC CTTTTATGCT 
    TAATAGTGTT CTATTGGTGT TTGCTAACAA GCAAGACATG AGGGGCGCAA 
    TGACTCCGAT GGAAGTATGC GAGGGCCTTG GTCTATATGA CCTGAACAAC 
    CGTATATGGC ATATCCAAGG AACCTGTGCT CTCAAAGGCG ATGGCCTCTA 
    TGAAGGATTG GACTGGTTAG CAACAACTCT GGATGAGATG CGAGCTTCAG 
    GGCGGATAAC TTCAACATCA TCGTCATGAA GAATAACAAG GGATAGTTGA 
    TCCTTGCGCT ATGTGGATTG ACTTGATGCC TGCATCTTGC TTTCTTTTCC 
    ATTTGATTTC CTCCTCTCCT GTTGTAGCTA TTGGTCGTGA ACTGGGCGAG 
    GCTTTTTAGT AAAGCTTTGA TTCAGGCAAA ACTGTAGTGT TACGAAAGAC 
    AGGTGACAGT GATGCACTTG CACTTGGGAG GAGTGGTTGG TTTACTTACT 
    GAAAGTTCAT CTTTTCGTGG AAGCGGGAGT GGTTGTAAAT ATATGAAGCT 
    GCTACTGTAC TGATATAATT GTGGTTGCTC TT

    Gene models with high sequence identity

    1. AT5G17060.1 [+] show detail - ADP-ribosylation factor B1B
      E-value: 8e-93; Score: 337.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan ARF/SAR superfamily 1.2e-16
    FPrintScan ARF/SAR superfamily 1.2e-16
    FPrintScan ARF/SAR superfamily 1.2e-16
    FPrintScan ARF/SAR superfamily 1.2e-16
    HMMTigr Small GTP-binding protein 7e-18
    HMMPanther ADP-RIBOSYLATION FACTOR, ARF 1.3e-125
    HMMPanther ARF/SAR superfamily 1.3e-125
    Gene3D no description 1.5e-60
    ProfileScan ARF 22.184
    superfamily P-loop containing nucleoside triphosphate hyd 1.1e-51
    HMMPfam ARF/SAR superfamily 1.7e-69
    HMMSmart ADP-ribosylation factor 1.7e-97
    HMMSmart Small GTPase SAR1-type 4.8e-18

    See the detailed result >

    AT5G17060.1

    Model type
    Protein coding
    Short Description
    ADP-ribosylation factor B1B
    Curator Summary
    A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster), other ARFs and ARF-like proteins.
    Computational Description
    ADP-ribosylation factor B1B (ARFB1B); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor B1C (TAIR:AT3G03120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR