K05047

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05047

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K05047

Determination of introduced cDNA(s)

  • J013045L16 - Rice Full-length cDNAs - Original: J013045L16

    full reading [+] show sequence

    Nucleotide sequence: J013045L16 - full reading 
    GGAGCGGCTC ACGTGCCATC TCATCTACTC TATCTCTCAC CTCCGCCCGC 
    CTCGTCGTCT CTCTGACAAC CGTACAGCCG CCCGCCTTCC GCTCCGCGCC 
    GCCGCCTCCG CCGCTGCCGC CGCGCGGGCG TACGTGTCTA TGGCGACGAT 
    GTCTCGCCGC GCACTCGGCT CTGCGTTCGC GGGATTCACG CGGACACCAG 
    CTATGACTCC GACGGCCACC TTGCCTTCCT CGTGCGCGTC CCCGGCGCGT 
    CTCCTGCGGT GGCGCCGGAG CGCGGGTGTA GGCGCCCGGC GGTTCGCGTC 
    CGGCCGCAAC GCGCGGATTA GCATGAGCCT CCGCGCCGGC ATCGTCGGCC 
    TGCCCAACGT CGGCAAGTCC ACACTCTTCA ATGCCATTGT AAGGAACCTT 
    CCCTCTGCTT CTTCCGAAGA ATTCCGTGCT GTTATGAACT CGTTTTTAGC 
    TGGAAGCAAC TCGAGGAGAA AGAAGGCGAT CTTGATTATT TGTGCTTTTG 
    AGGAGTTCTT CTCGATTCAT GGATTGGTTT TGGTCGAGGA TGAAGTGGGT 
    ATGCGGCGTC AATGGAACTG CGCATCAACT GTTTGATTCT TTGCCACACA 
    GAGATGCAGC TCTCCAACGT TTGACTAGTT ATGAACTTAT GATGCTTAAC 
    TTAGATAGGA CTCGTCACAG ATTTTTTTGC ACTGAATTTT CATTTCCCTA 
    GCTGCAGGAG TGCTTTTGCA GTCGTGATGA TTGTTTGATG GGAAGTATAG 
    TGAATCTTTA ACGCATGAAA ATGCAACTGC CGTATTGCAC GGGACATGCC 
    ATTCCTCGCA ATAATGTGCA TGCTATTGTT GATTACGTTG TAACATGAAT 
    TCTTTTGTCA ACGTTGTCAG GTTGAAAATG GGAAGGCACA AGCTGCAAAC 
    TTTCCCTTCT GCACCATAAA CCCCAACGTT GGTGTTGTGG CTATCCCAGA 
    TGCTCGCTTG CATGTGCTCT CAAAATTAAG CAAGTCTAAG GAGACAATCC 
    CAACATCCAT AGAGCTTGTG GATATTGCAG GTCTCGTCAA AGGAGCAAGC 
    AAAGGAGAGG GACTAGGAAA CCAATTTCTT TCGAACATCC GTGAGGTTGA 
    TTCCATCCTT CAGGCCTTTT CAGGTTGTGC GATGTTTTGA AGATGATGAT 
    ATTGTTCATG TGAGTGGGAA AGTTGATCCC AAATCAGATA TTGATGTAAT 
    TAATCTGGAG CTTATATTTT CTGATCTTGA CCAGATAGAG AAAAGACTGG 
    ATAAGCTTAA AAAGAGCAAA ACTAAAGACC AGCAAGTAAA GGTCAAGGAA 
    CAAGCAGAGA GGACTGGATT GGAAAAAATT CAGACTGTAC TTATGGATGG 
    AAAACCTGCT AGATCTGTTG ATTTGGCTGA CCATGAGAAA GAAGCTATCC 
    AACATCTTTG TCTACTAACT ATGAAACCTG TCATTTATGT TGCCAACGTA 
    ACTGAATCTG ATCTTGCTGA ACCTGGTAAC AACCCTCATG TCAAAGAGGT 
    AGCCAAACTA GCAACAGACT TGGAATCTGG CATGGTTACA ATATCAGCTC 
    AGGTTGAGGC TGAACTTGCT GAACTGCCAT TAGAAGAGAG AGTCGAATAT 
    CTAAAATCCC TTGGTGTTAC TGAAAGTGGA CTAGGAAATT TGGTAAAGGC 
    AACATATGAC CTTCTGGGAT TGAGGACTTA TTTCACAACT GGAGATAAGG 
    AAACAAAAGC TTGGACTATT CTTGCAGGCA TGACTGCACC TCAAGCAGCA 
    GGAGTTATTC ACAGTGACTT TCAGAAAGGC TTCATTAGAG CTGAAACTGT 
    ATCATATGAT GATTTTGTCG CGGCGGGTTC TCTTGGAGTT GCAAGGGAGA 
    AGGGATTGTT GAGGTTGGAA GGGAAGGATT ACATCGTGCA GGAAGGCGAT 
    GTCATGCTTT TCCGGTTCAA CGTTTGACAA CAACTCAACA ATAATAGCAG 
    CAGCGAGAAG TTTCAATATA TACTCGAATT TTGCACAAGA GAGAAACAGA 
    TCATGGGATT TTTTTTTGTC TGAGACATTA ACTGTACTTG CGTCATTGGA 
    ACTTTGCGGC ATCATTGCTT TAGCCCATGG CTTTGTAAAT CATTCAAGAT 
    AAGCTCTCTA CGAAACATTA GAGTATAATT CGACATACCT ACTTATAAAC 
    TGTCATTTGA ACATTGTAAT CTTCAATCGA AAATTTGATG CGACATCTTT 
    TTTAAGTGTT AAGGG

    Gene models with high sequence identity

    1. AT1G56050.1 [+] show detail - GTP-binding protein-related
      E-value: 8e-99; Score: 358.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D G3DSA:3.40.50.300 1.29999924468179e-25
    HMMPanther Conserved hypothetical protein CHP00092 9.49996855930963e-45
    HMMPfam GTP-binding protein, HSR1-related 7.90000000000001e-10
    superfamily SSF52540 5.59999989417023e-21
    FPrintScan GTP1/OBG 2.10000267834031e-21
    FPrintScan GTP1/OBG 2.10000267834031e-21
    FPrintScan GTP1/OBG 2.10000267834031e-21
    HMMPanther PTHR23305 9.49996855930963e-45
    superfamily P-loop containing nucleoside triphosphate hyd 1.5e-10
    superfamily TGS-like 4.8e-37
    superfamily P-loop containing nucleoside triphosphate hyd 1.1e-25
    HMMPfam Protein of unknown function DUF933 2.5e-38
    HMMPanther Conserved hypothetical protein CHP00092 4.1e-13
    HMMPanther GTP-BINDING PROTEIN-RELATED 4.1e-13
    HMMPanther Conserved hypothetical protein CHP00092 5.6e-141
    HMMPanther GTP-BINDING PROTEIN-RELATED 5.6e-141
    Gene3D no description 7.2e-07
    Gene3D Beta-grasp fold, ferredoxin-type 1.8e-40
    Coil coiled-coil 0
    HMMTigr Conserved hypothetical protein CHP00092 5.1e-86

    See the detailed result >

    AT1G56050.1

    Model type
    Protein coding
    Short Description
    GTP-binding protein-related
    Computational Description
    GTP-binding protein-related; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF933 (InterPro:IPR013029), TGS-like (InterPro:IPR012676), GTP1/OBG (InterPro:IPR006073), Conserved hypothetical protein CHP00092 (InterPro:IPR004396), GTP-binding protein, HSR1-related (InterPro:IPR002917), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: GTP binding (TAIR:AT1G30580.1); Has 18400 Blast hits to 18396 proteins in 3002 species: Archae - 377; Bacteria - 10244; Metazoa - 785; Fungi - 603; Plants - 304; Viruses - 0; Other Eukaryotes - 6087 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR