K04350

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04350

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04350

Determination of introduced cDNA(s)

  • J013002E16 - Rice Full-length cDNAs - Original: J013002E16

    full reading [+] show sequence

    Nucleotide sequence: J013002E16 - full reading 
    GCCCGATCCC CCTTCACACG CGGCGGTTGA CGTCTCCGAC GCCGGCGATC 
    TCCTCCGCCC CCTCCCCTCC CCCGCCGCCG CCGCCGACCC TCCTCAGCTC 
    GGCCGCCACC TCCTCCGCCA GAGGGAGAGC CCCCTCCACC TCGGCTCCTG 
    CTCCTCCAAC GCCGCCATGA ATTACATCAT CGGAGCATTC AAGGCGCCCT 
    GCGACGTCTT CATCACCTTC GCCGATGAGA GGAGCCGGAA GCAGGTGGCG 
    ATCAAGAAGG ATAACGGGAA GACGTTGATG GTGCCGGCCT TCCAGAGCCT 
    GGAGACTATT GCAGGAGAGG TGTCGGTAGC GCCCGTTCCA GGTAAAAGGG 
    TGGAGCACCA AGGTGTCAAG ATTGAGCTGC TGGGTCAGAT AGAGCTGTAC 
    CATGAGAGAG GTCACTTCTA TGACTTCACT TCGTTAGTGC GAGAGTTAGA 
    GGTTGCTGGT GAAATCTATG AAAGGAAGAC TTATCCATTT GAATTCTCTA 
    CTGTTGAGAT GCCTTATGAG TCGTATAACG GAACAAATGT CAGATTGAGG 
    TACATCCTGA AAGTTACAAT TGGCAGACCA TATGCTACTA GTGTTGTGGA 
    ATGTCGAGAT TTCTGTGTAA GGAATTACAC TCCTCTTCCT TCAATTAACA 
    ATAGCATCAA GATGGAAGTT GGAATTGAAG ATTGTTTGCA TATTGAATTT 
    GAGTACAGCA AAAGCAAGTA CCATCTCAAG GATGTGATCG TGGGAAAAAT 
    CTATTTTCTT CTAGTCAGAA TAAAGATAAA GAACATGGAG CTTGAGATTC 
    GTCGGCGGGA ATCAACAGGA TCTGGGCCTG GCACATATAT TGAGACTGAG 
    ACACTTGCAA AGTTTGAGTT GATGGATGGC GCTCCCGTAA GAGGTGAGTC 
    TATTCCGGTA AGACTCTTCT TGACACCATA TGAGTTGACC CCGACTTACC 
    GCAACATAAA CAACAAGTTC AATGTCAAGT ACTACCTGAA CCTGGTTCTT 
    GTTGACGAGG AAGACCGGAG GTACTTCAAG CAGCAAGAGA TCACAATGTA 
    CCGCCTTCAA GAAACTCCGC AATCTTCATA AACTCCTGTT GCCTTGACTT 
    GGTAACGACC AGAAAAACTT GGGTCTGTCT GGCATAGGAG AGCACCGGAG 
    TAGCAACTTA GCATGATGCG CCTTCCTGTA TATAACTCTC CAGAGGAGCG 
    ATGCCCTTTG TGATGTACCG TGTACTGTTT TTGCCTATGC TCTTTTCCCC 
    CCCATTTTCT CCTTCATTCT GATCAGGAAA CAAACCATGA CAACGCTGGC 
    ATTGTCGCCC TTTTCGCCTT GTTCATTTGA GCTTTCTTGT TAGACTTTGT 
    GGGATAACCA TATATTTGTT GATATTTTGC TTCATTGTTT TACCCTTT

    Gene models with high sequence identity

    1. AT5G53530.1 [+] show detail - vacuolar protein sorting 26A
      E-value: 5e-139; Score: 491.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Vacuolar protein sorting-associated protein 26 1.5e-154
    HMMPanther VACUOLAR PROTEIN SORTING 26 RELATED 1.5e-154
    HMMPfam Vacuolar protein sorting-associated protein 26 2.2e-119

    See the detailed result >

    AT5G53530.1

    Model type
    Protein coding
    Short Description
    vacuolar protein sorting 26A
    Curator Summary
    Homolog of yeast retromer subunit VPS26. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.
    Computational Description
    vacuolar protein sorting 26A (VPS26A); CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 26 (InterPro:IPR005377); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 26B (TAIR:AT4G27690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR