K04138

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04138

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04138

Determination of introduced cDNA(s)

  • J033040F22 - Rice Full-length cDNAs - Original: J033040F22

    full reading [+] show sequence

    Nucleotide sequence: J033040F22 - full reading 
    GAATTTCCAT CCGCCGATCC CCTCCGATCT CGAATTCTCG ACCTCCCTTC 
    CTCCTTCGCC GCCGCCGCCG CCGCTCGTCG CCGGCCACCT CCACCGCCGC 
    CATGAACTAC ATCGTCGGAG CGTTCAAGCC GCCCTGCGAC ATCTCCATCG 
    CCTTCTCCGA CGCCAGGTCG CGGAAGCAGA TCGCGGTCAA GAATGACAAT 
    GGGAGGACGG TGATGGTGCC GGTCTTCCAG AGCCTGGAGA CCATATCCGG 
    GGAGGTGTCG GTAGTGCCGG TTCCGGGCAA GAGGATCGAG CACTTGGGTG 
    TCAAGATTGA GTTACTGGGT CAGATAGAGC TTTATTTGGA GCGAGGCAAA 
    TTCTATGACT TCACTTCATT GGTGCGTGAG CTAGATATTC CTGGTGAAAT 
    TTACGAGAAG AAAACATATC CATTCGAGTT TTCCACTGTT GAAATGCCTT 
    ATGAATCTTA CAATGGAACA AATGTCAGAT TAAGATATAT TTTGAAGGTT 
    ACGATCAGCC GAAACATTAT GGGCATGGGC AGCATTGTGG AGTTCCGTGA 
    GTTCTGTGTA AGAAATTACT CTCCTGCCCC CACAATCAAC AACAGTATCA 
    AGATGGAAGT TGGAATTGAG GATTGCTTAC ATATTGAGTT CGAATACAGC 
    AAAAGCAAGT ACCATCTCAA GGATGTGATT ATTGGGAAGA TCTACTTTCT 
    TCTTGTCAGA ATAAAGATAA AAAACATGGA ACTAGAAGTA CGTCGTAGGG 
    AATCAACAGG AGCAGGCTCT AGTGCATATG TTGAGACTGA AACTCTTGCA 
    AAGTTTGAGT TGATGGATGG TGCTCCTGTC AGAGGAGAAT CCATCCCGGT 
    GAGGCTATTC TTGACGCCTT ACGAGCTGAC CCCTTCGTAT CGGAACATAA 
    ACAACAAGTT CAGCGTCAAG TACTACCTGA ATCTGGTCCT TGTTGATGAG 
    GAAGATAGGA GGTACTTCAA GCAGCAAGAG ATCACCATGT ATCGCCTTCT 
    AGAAACCCCC CAGGCTTCCT AGATTCCAAA CTGGAGCAGC AAGATGTTTT 
    TCGATTCTCA GGTTTTGTAC AAGCTAGCAT CGAGGTTAGG GCAATGGCGT 
    ACTTACATGT ATATAAACTC CAGAAGAGCT CGGCAGTTCA CTAGTGCTGC 
    TCTCCAAATC ACATTTCTTT GTTTCTGTAT CTTCTTGTCC TCTGTGTGCT 
    TATGGTAGAC CCTTTGATTC ATGTGGAGTA TATGTGCATT ACCTCCCCCT 
    GTTTATTTCT GTTTCTTGAA AGTAATCTGT CCGAAGACCT TATGTGTATT 
    ATCTCACAAG GATCTTTGTT AATTCACTTG ATTGAAGTTT TGCAGTGATG 
    ATTGAAGTTT TGCAGTGATG CATAACATGC TTCATT

    Gene models with high sequence identity

    1. AT5G53530.1 [+] show detail - vacuolar protein sorting 26A
      E-value: 4e-138; Score: 488.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Vacuolar protein sorting-associated protein 26 2.5e-151
    HMMPanther VACUOLAR PROTEIN SORTING 26 RELATED 2.5e-151
    HMMPfam Vacuolar protein sorting-associated protein 26 7.7e-119

    See the detailed result >

    AT5G53530.1

    Model type
    Protein coding
    Short Description
    vacuolar protein sorting 26A
    Curator Summary
    Homolog of yeast retromer subunit VPS26. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.
    Computational Description
    vacuolar protein sorting 26A (VPS26A); CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 26 (InterPro:IPR005377); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 26B (TAIR:AT4G27690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR