K03717

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03717

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03717

Determination of introduced cDNA(s)

  • J013119G19 - Rice Full-length cDNAs - Original: J013119G19

    full reading [+] show sequence

    Nucleotide sequence: J013119G19 - full reading 
    GCCTCACTAC GTCTCTCTCC TCTCTCTCTC CGCCGCCGCC GCCGCCGCCG 
    ACTCTTGCCT TTCCCACGCC CTCGATCTTG GCGGCTGGAG AGCCATGGCG 
    ATGCAGTCCG GCAGGCGAGC CTCGTAGCCA AGAGGGGCCC TCGGCCACCC 
    TTCCAGGGAG GAGGTCGACG AGGTGGGTAT GGTGATGACT CTGAGAGGAT 
    GTCTCGGAGG CCATATGAGC GCCATAGCGG CACTGGCCGT GGGTATGAGA 
    TGAAGCGTGA GGGTTCGGGG CGTGGGAACT GGGGAACTAC CACTGATGAA 
    ATTCTCGCCC AGGAAACTGG GGAAGCCCTG AAATTGGATG AGAAGGCCCC 
    TGTTACTGAG AAGCAAGGCG CACCGGAGGG TGCTCCACAG GCAGATGAGA 
    ACAAGGATAA CAAAGATGTC ACTCCAAATG AGGAAGAAAA GGAAGAGGAT 
    AAGGAAATGA CTCTTGAGGA GTTTGAGAAA TTAAGGGAGG AGAAGAGGAA 
    AGCACTTCTT TCTTTGAAGA CTGAAGAGAG GAAGGTTGAA ATTGACAAAG 
    ATTTGAAGTC TATGCAACCA CTTTCCAATA AGAAAGAAAA TGATGAAGTT 
    TTCATCAAAC TGGGATCTGA CAAGGATGCT TTGAAGAAGA AAGAAAATGC 
    TGAACGTGAT GAGCGTGCTA AGAAGTCTGT GAGCATCAAC GAGTTCCTAA 
    AACCAGCTGA AGGAGAGAGG TACTATGGCG GCCGTGGTCG TGGCAGGGGC 
    CGCGGGGATC GTGGCGGTTT CAGGGGTGGA TATGGTGAGG GCCATCGCTC 
    TGCAGCTCCA CCAGCTCCAG AAATCAAAGA CCAATCCCAA TTCCCCACTC 
    TTGGTCGGAA GTGAAATGCA TGTACTGCCT GCAGTATCAA GTTATGTTTG 
    CGGTCAACTT TGAATTTTGT CTATCCGTAA ATCACTGTGC AAGTGCTGAT 
    CTGATCAAAC AAATAATGGT GTCGCATTTG GTCAAGAGTC CCCGATATGT 
    CAGTCGAATT TGTATATCGG AGTTGCTTGT TACGTTTCAG AATTTTGTAG 
    GCTGTTATTG AACTCCCTTC TGTTACCAGC AAAGCGTTTC C

    Gene models with high sequence identity

    1. AT4G16830.3 [+] show detail - Hyaluronan / mRNA binding family
      E-value: 9e-28; Score: 121.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Hyaluronan/mRNA binding protein 7.7e-26
    Coil coiled-coil 0
    HMMPanther NUCLEAR RNA BINDING PROTEIN A-LIKE PROTEIN 3.1e-82
    HMMPanther HYALURONIC ACID-BINDING PROTEIN 4 3.1e-82

    See the detailed result >

    AT4G16830.3

    Model type
    Protein coding
    Short Description
    Hyaluronan / mRNA binding family
    Computational Description
    Hyaluronan / mRNA binding family; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 21958 Blast hits to 10880 proteins in 1019 species: Archae - 12; Bacteria - 7276; Metazoa - 6848; Fungi - 1552; Plants - 2999; Viruses - 314; Other Eukaryotes - 2957 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR