K03333

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03333

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K03333

Determination of introduced cDNA(s)

  • J013109B06 - Rice Full-length cDNAs - Original: J013109B06

    full reading [+] show sequence

    Nucleotide sequence: J013109B06 - full reading 
    GAGCGGTAGC AGCAACCTCC TCGACGTCGC GCTCGGGCTC GATCCCAACC 
    GGAGAGGAGG ATGGCGGCGG CGCCGCCGGG AGGGCAGGAG AAGGTGATCG 
    CGGCGGCGCA GCACATCGTC AAGTCGCTCG CCAACTCCAA GAACGCCGCC 
    GACGACATGA TCCGGATACT CTCCGGGTTC GACGACCGCC TCACCTTCAT 
    GTCCGACCTC TTCCCGCCTC CCCCTCCCGC CGCCGCCGCC GTGAGGGAGC 
    CCTCCGTCGT GGAGGAGGAG GAGGCCGGCC CCGATGACGC GCGGGAGGAC 
    GAGGTGGAGG AGGCGGCGGA GTTGGTGGAG CGGTGGGATT CTCCGGAGGA 
    GGGGGATAGG CTGGTGTTCG ATTCGGCGAA GGACGCGGGG GATTACCTGG 
    GCGCTGCAGG CGGCGATGGC GCGGCTGGAG GACGAGTTCC GCCACCTGCT 
    GGCCCGCGGG ATGTCGCCGC TCGCCGGGGA GGACCTGCAC GCCTCCCTCC 
    TCCGCCGCCT CTCGCTCACG GTGCCGTCCT TCGCCTCCTC CGCCTCTGAC 
    CTCGATTGCC CCTCCTTCGC CAGCCACACC GGCGACGGGG ACGAGTCCGG 
    CGGCGCGGGC GGCAGGGCCT CCGTCTCCGA CGAAGAGATC TCCCCGTACC 
    TCATCTCCCC GGACACCGTC GGCGCCCTCA GGGGCATCGC GGACGTCATG 
    CTGCGCGCAG GCTACGGGCC GGAGCTGTGC CAGGTCTACG GCGAGATGCG 
    CCGCGACACG CTCATGGAGT GCCTCGCCGT GCTTGGCGTC GACAAGATGA 
    GCCTGGAGGA GGTGCAGCGC GTGGAATGGG GCGTCCTCGA CGGCAAGATG 
    AAGAAGTGGA TCCAGGCGCT CAAGGTCGTC GTCAGGGGGC TTGTTGCTGA 
    GGAGCGCCGC ATCTGCAACC AGATCTTTGC CGCCGATGCC GAAGCCGAGG 
    AGGATTGCTT CACTGAGGCA GCCAAGGGGT GTGTCCTGCA GCTGCTCAAC 
    TTTGGTGACG CAATTGCAAT CGGGAAGAGA TCGTCCGAGA AGCTGTTCCG 
    CATTCTTGGC ATGTATGAGG CGCTGGATGA GGTGTTGCCG GAGCTCGAGG 
    GCTTGTTCTC AGGTGATGCA AGGGATTTCA TCAAGGAAGA GGCTGTGGGG 
    ATACTCATGA GGCTTGGGGA TGCGGTGCGT GGCACCGTTG CAGAGTTTGC 
    AAATGCAATA CAGGGGGAGA CATCTCGGAG AGCGTTGCCC GGTGGGGAGA 
    TTCACCCACT CACGCGGTAT GTCATGAACT ATGTCCGACT GCTTGCAGAC 
    TATAGCCGCT CACTGAACCA ACTTCTCAAG GACTGGGATA CTGAGCTAGA 
    AAATGGAGGT GACAACGTGA ATATGACTCC ACTGGGGCAG TGTGTGCTCA 
    TACTGATCAC ACATCTACAG GCCAAGATCG AGGAGAAATC AAAGCTGTAT 
    GAGGATGAGG CACTTCAGAA CATATTTTTG ATGAACAATC TGCTGTACAT 
    TGTACAGAAG GTGAAGGATT CAGAGCTGAA GACCTTGCTT GGCGATAATT 
    GGATCCGCCA GCGTCGTGGT CAGATAAGAC GGTACTCTAC AGGGTACCTT 
    AGGTCCTCAT GGACGAGGGT ATTAGCTTGT CTTAGAGATG ATGGATTGCC 
    ACAGACAATG GGTTCATCAA GTGCACTCAA GGCTTCACTC AAGGAAAGGT 
    TCAAGAACTT TAACTTGGCA TTCGAGGAGT TATACAAGAC ACAGACAACA 
    TGGAAGGTTG TGGACCCTCA ATTAAGAGAG GAGTTGAAGA TTTCAATCTC 
    AGAGAAAGTC CTTCCAGCAT ATCGTTCTTT TGTTGGAAGG TTCCGAGGTC 
    AGCTAGAGGG TGGAAGGAAT TCCGCAAGGT ATATAAAGTA CAACCCTGAA 
    GATTTGGAGA ATCAGGTCTC AGATTTTTTT GAAGGCAGAA GACCAAATGC 
    TTGATCGATT AGTCATGTTT GATGGTTAAG GGATGTTTAT ATCAATGATT 
    TTAGTTACAA CTCCCTCATG AATTTCATTG GTGGCGCTAT ATTGGTAGCT 
    TGATCTGCAA AGACCTTTGA TAATCCGAAG ATGGAAAGAA AAATCAGTTT 
    TGCCTGTAGA AGAAGCAGTG TGAACTGCAA GCAAACAGAA TTTTTTGGTA 
    TTGCGAAGCA ATCGGAATTG GATACCTAGC TTTTGATCTA TCAAGGTGCT 
    GACTATATCA AGGTTCGACA TGAAATTTAG GACACTGGAC ACTACCATGA 
    GCTGTGTAAT TCTTACATTT TTTTTTCTCA TCTTTTGTTG ATTGTAACAT 
    CTCGTGACTT GTTTGACATC GAAAGAATGG TTGGTGCTTG GC

    Gene models with high sequence identity

    1. AT5G50380.1 [+] show detail - exocyst subunit exo70 family protein F1
      E-value: 6e-138; Score: 488.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther EXOCYST COMPLEX PROTEIN EXO70 3e-159
    HMMPanther Exo70 exocyst complex subunit 3e-159
    HMMPfam Exo70 exocyst complex subunit 4.1e-119

    See the detailed result >

    AT5G50380.1

    Model type
    Protein coding
    Short Description
    exocyst subunit exo70 family protein F1
    Curator Summary
    A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
    Computational Description
    exocyst subunit exo70 family protein F1 (EXO70F1); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: plasma membrane, exocyst; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein D3 (TAIR:AT3G14090.1); Has 952 Blast hits to 944 proteins in 146 species: Archae - 0; Bacteria - 2; Metazoa - 140; Fungi - 117; Plants - 671; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR