K02908

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02908

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K02908

Determination of introduced cDNA(s)

  • J033128G01 - Rice Full-length cDNAs - Original: J033128G01

    full reading [+] show sequence

    Nucleotide sequence: J033128G01 - full reading 
    GGCCGCGCTT GCTCGGCACG GCAACCCACG CGAAATCGGA GATTCCTTCG 
    ATTCACGAGA TCACCACGAG TCCACCACCC TCCTCCTCTC GCTGGATTCG 
    ATGGGCGCTC GGTGAGATCC GAATCCCCCA CGGTGGTCGC CGGAGATGAA 
    GCCGCCGCGG AGGTGGATGT ACGGGCGGGG CGGCGGGAAG GGGAAGCCGG 
    CGGGGCTGCT GCTGCTGGGG GTGTTCCTCT GCTTGTCGGT GGTGCTGCTG 
    CTGCTGCTGC ACGGCTCGTC CCCGTCGCTG GAGGGCGAGG GGAGGAAGCC 
    TGAGGCGGTG GAGGCGGCGG GGGGAGGGGG AGAGGAGGAG GAGGTGGCGG 
    TGGCGCGGGC GGAGGTGGAG GAGGCGCCGC TGCCGCCGGG GAACGCGCGG 
    CTCGCCTTCC TCTTCATCGC CCGCAACCGC CTCCCGCTCG ACCTCGTCTG 
    GGACGCCTTC TTCCGCGGTG ACAAGGAAGG GAGATTCTCC ATCTTCGTGC 
    ACTCGCGGCC GGGGTTCGTG CTCACCCGCG CCACCACCCG ATCCGGCTTC 
    TTCTACAATC GGCAGGTCAA CAACAGCGTC CAGGTGGATT GGGGGGAGGC 
    GAGCATGATC GAGGCTGAGC GTGTTCTACT CGCCCACGCG CTCAAGGACC 
    CCTTAAACGA GCGCTTCGTG TTCGTCTCCG ACAGCTGTGT GCCATTGTAC 
    AACTTCAACT ACACTTACGA CTACATAATG TCTTCGTCAA CCAGTTTTGT 
    TGACAGTTTT GCTGATACAA AAGCGGGTCG GTATAATCCA AGAATGGACC 
    CAATTATCCC AGTGGAAAAT TGGAGAAAAG GCTCGCAGTG GGCTGTGTTA 
    ACAAGAAAAC ATGCTGAAGT TGTGGTTGAA GATGAAGAGG TTTTGCCAGA 
    ATTCCAGAAG CATTGCAGGA GAAGGCCCTT ACCAGAGTTC TGGCGGGACT 
    GGGATCGTCC TATTCCTGCG GAGGCATGGA AGGCACATAA CTGCATACCA 
    GATGAGCACT ATGTTCAAAC ATTGCTTGCA CAACATGGTC TTGAAGAAGA 
    GCTTACACGG AGGTCAGTTA CACACAGTGC GTGGGATCTA TCATCTTCTA 
    AAGATCGTGA AAGGCGTGGA TGGCATCCTG TAACATACAA AATCTCAGAT 
    GCTACTCCTG CACTTGTAAA ATCCATAAAG GATATTGATA ATATATATTA 
    TGAGACTGAA AATAGAAAGG AGTGGTGTAC AAGTAATGGA AAACCAGCAC 
    CTTGCTTCCT TTTTGCAAGG AAGTTTACAC GAGCAGCTGG TCTGAAGCTT 
    CTTGATTTAT CTTTGATAGC AGCAAATGGC GCATCTACCA TGTAAAGTTT 
    CTCCGTCAAA AGCAGAATAC TGCCAGCTTG CACATACGTA AAGGAAAGTG 
    GTGGAGGGGA CAGAAGATAA CAGCGAATTT TTTTTGGGCA TCTTCATTAC 
    AATTTGTTGC ACTCTGAAAA GGGACATAGG TGTTCTAAAG CAATAAAGTT 
    TGTTTCTTTT AGCACCTAGG TTAGTACATA TGTTAACCCA CTACTTAGCA 
    TTATAACTGT AACTGTAAGC AACCACCTGC AGTTGGATTG GCAAGAATCA 
    CCTCAGTTCT TTTCACGACA AATTCCTTTT TCAAATTTAT AGAGAATTGG 
    CATGTCTTAT ACTTG

    Gene models with high sequence identity

    1. AT5G14550.1 [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
      E-value: 1e-134; Score: 477.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan PRICHEXTENSN 7.3e-11
    FPrintScan PRICHEXTENSN 7.3e-11
    FPrintScan PRICHEXTENSN 7.3e-11
    HMMPfam Core-2/I-Branching enzyme 1.9e-82

    See the detailed result >

    AT5G14550.1

    Model type
    Protein coding
    Short Description
    Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
    Computational Description
    Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT1G11940.1); Has 574 Blast hits to 572 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 548; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR