K01742

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01742

Determination of introduced cDNA(s)

J013021J15 - Rice Full-length cDNAs - Original: J013021J15

full reading [+] show sequence

GATGGAGGCG GCGGCGGCGG CCTCTCCACC GGCCGGAAGA TGGTCCCGTC 
GTCGAGCTGG GCCGAGCGGC GCGGCTCGTG CGCGACGGCC TCTTCTTCTC 
CCCCTGCCCC ATCGCCGCTC TTCACAGGAT CGCGGCGTGG CGGAGCAGGG 
GCGCCCTCCC GGTCGCCGTA GATGTGGCCG CGGCGTTCGT CGAGATACGG 
CTGCGGGAAT CGGAATCCCT TCTTCTTCCC GGAATGTGAT GGCTGTGGAT 
GATCCGCTGG AGTCTGAAGA GATGTCGGCG ATGCTGTGTA GTATGGCAAT 
CATGAGGTGA ATCCAATGCT TGAATGCCAG CAAAAATGGA AATTTATATT 
CCCTTGTTCT GTGGCTTGTG ACAAATATAA AAGAAATAAA GGATTCAGGC 
TGCATTGGAC TTGTTCACGA GATAGGAGTG CTCTCTTCAG ACAGAAATGT 
AGTCCAATGT TCCTGTCCAG CAAAACTTCT GCAGAAGTTG AGTTTGTCCA 
CTATAGGTGA AAGATGTCTC ATAGATGCAG CACTACTGCT GTTTGAGATG 
GCCAGCAATA ATGTGAAAGA GAAACTGAGG AAGCTTCTTA TGTTATCCCT 
GGGAAAGTTG GCTAGAATTT CTATCCTCAC GGAGTCCTCC AAAGAAATAG 
AATCAGCTGA CAGGGCAACA GAGAAGCTGG AAATGTTCAA GTCACAGTTG 
AAACAGAAGG ATGTATGTTT GGCAGAAAAT GGCAACGGGG GATCATTGAA 
CACAATCTTG TTGGAGAAAC GTAGCAGATG GTCTATAACA AAGTCTTGGA 
CCCCCTGTGC GATAGGAATG GTACCATGCT CATTTAGTTC AACGGCTGTT 
CTTCCGACAC TTGATGTCAT CGATCATGAA TTGAAAGATG ACACATTGGA 
GCAACATGTA AATTTTGAGC TTGATGACCA TACTGAAAGG GCTGGCTATC 
ATTCTCATCC TGAGAAGCAA TTGGATGTTG AATGCATTCC GGCAATATCT 
GAACGTGAGA TTTCAGATAT GTCAGAAGTG ACCTTTCCTC TGAAAGTCTG 
AAGGGTAAGT TACTGGTTGG TGGCGTGTGG AAGGTGATGA GTGAAGGGAG 
CTACTCTTGA TTAAGTCAAA GATGAAAATT TTGTTGTAAC AGTAGCTAGT 
TAAGTTGTGT CATGTGTCCT CTTAAACCAG CAATTTCAGG CTGTTACGAA 
CGGCGGATAG TTCTATCTTA AAGCTGGAAA AAAAGAGAGG GAAATATATG 
ACCAGTACTT AAACTTGGAC TAGGGTGTCA TTTAGGTCTA TGAACTTATA 
ATGCACATCC ATTTCCTATT TTGGTTTAAT ATATAATCTG AGGTTCAAAG 
TACAAGTGAC TCAGGTTGGG TGCTG

Gene models with high sequence identity

Not founds.

InterPro Scan Digest

See the detailed result >

J023119J07 - Rice Full-length cDNAs - Original: J023119J07

full reading [+] show sequence

AAAACCCTCC TCTCCTCCCC CTCTCCCCTC CTCTTCCCCG TGCGACCCGC 
CCAACCCAAA CCCTAGGTCA CCCAGCGCCG CGGCGCCCCC GGTTGCTGAC 
TTGCCGCGGG AAGGAGGATG AGCAGGCGGT GGAGCCGGAC GATCTACGTG 
GGGAATCTCC CTGGTGACAT CAGGGAGAGG GAGGTGGAGG ATCTCTTCTA 
CAAGTATGGC CGAATTGTTG ATATTGACTT GAAGATCCCT CCGAGGCCAC 
CAGGCTATGC TTTTGTAGAG TTTGAAGATC CTCGTGATGC TGAAGAAGCA 
TGTGCTGGCA GGGATGGTTA TAACTTTGAT GGACATCGTC TAAGGGTTGA 
ACCTGCTCAC GGTGGGAGAG GTAATGGTGG TTCCTCCTTT GACCGCCCCA 
GCAACTTTGG TGGTGGAGGA CGCCGTGGTG TGTCCAGGCA CTCAGAATAC 
CGTGTTCTGG TTACTGGTTT GCCTTCTTCT GCATCATGGC AAGATTTAAA 
GGACCATATG CGCAAGGCTG GTGATGTTTG TTTCTCAGAA GTGTATCGCG 
AGGGCGGCGG TACTGTAGGG ATTGTGGACT ACACAAACTA TGATGACATG 
AAATATGCTA TAAAGAAACT TGATGACAGT GAATTCAGGA ATGCCTTTTC 
TAAAGGTCAC ATAAGGGTGA AGGAATATGA TGGCAAGCGC GCCCGCTCCT 
ATTCACGTAG CCGAAGCCCA AGTCGTAGCC GAAGCAAAAG CAGGAGTCTA 
AGTAAATCTC CTAGAACTCG CCGTTCAGCA TCCCGATCTC GATCTCGATC 
AAGGTCTGTT TCTTCCCGTT CACGGTCAGC ATCAAAAGGG CGCTCTCCAT 
CAAGATCACC AGCAAGATCC AAATCTCCAA ATGCTTCTCC TGCAAATGGT 
GAAGCATCAA GCCCCAAGAA ACGGAGCCCA AGCAGGAGCC CATCTCGTTC 
ACGGTCTCCT GATGCGAAAT CTGAATAGAA GTGATATGCT GATGTGAGCA 
GTGACACGGA CTTCTCATGT ACGGCTATTT GCTGTCCTTG ATGTCCGATT 
ACATCCGAAT CTTAGCTGTG GTGCAATGAA GCTCCATTAA ATTTGATACT 
ATGAATTTGT AGTAATGAAA ACATCAAACT ATGCACTTCA TGTGGCCTTC 
TGTGGCTGGT CTTGTTCCCT TGGGTTTTTG GTAGTTCGCC GAATGCTACT 
ATCTGGATTA TTTTTACTCA AAACATATGT CGGATGCTTA TTGATTTCCA 
AAAAAAAAAA AAAACTCTCC AGAAGGGTAT TATTACTGGC ACTCCAGTGA 
AGGATGCCGG AGAAGATAAT ATCATCCTTT GGAAACAAAA GCTAGAAGAT 
GGTAACGTCA AGCTGCAGTC TAGGCTCGAA CAAGAGGAGG AAGCTAAAGC 
TGCTTTGCTT GCAAGGATAC AGCGTCTCAC AAAGCTTATC TTGGTCTCCA 
CTAAGGCGAC ACAAACTTCT AGATTTTCTC CACATCCTGG ACCAAGAAGA 
AGACATTCTT TTGGGGAAGA GGAGCTTGCG TACCTACCTT ACAAAAGACG 
TGATATCGTG TTGGATAATG AAAGCAATGA ATTACTTTCT CCTGTTGAAG 
GACTTGGCAT GACACTTGAA GATTCGAAGG AGGAGAAAAA GAATCGGAAA 
GGAATTCTTA ATTGGTTTAA ACTTCGGAAA CGTGAAGGTG GAGCTTCTAT 
TCTGACAAGT TCAGAAGGTG ACAAGTCCAG TTTGACTAAA TCAACTGCTC 
CTTCAACACC TATTGGGGAG AGTGTTAATT TTCCTTCCGA ACCAAGAATA 
TCAAATTCTT TGGTTGGTGA GAGTGCATCG GTCGATCTCT TTAGCATTGG 
CCATGGGGAG TTCGCTAATG ACAGCCTTCA TGGAGAAGAA ACACCTCTGG 
CCAGCAGAAA AACAATAGAT CACGTTGACT TACTGAGAGA GCAATTGAAG 
ATTTTGTCAG GGGAGGTTGC ACTTCATACA AGTGTCCTAA AGCGCCTTAC 
CGAGGAAGCT GGAAGGAGCC CAAATAATGA GAAGATTCAG ATGGAAATGA 
AGAAGGTTAC TGATGAAATT AAGGGAAAGA AGCATCAGAT AGCGTCTTTA 
GAAAGGCAGA TACCTCATTC CATCTCAAAT AATCAAGGGA TGGCTGACAA 
GTTAGAACTT ACTCCGTCTT ATGCTGAACT GCTTGAGCAA CTCAACGAGA 
AATCCTTTGA TCTCGAGGTG AAGGCAGCAG ATAACAGAGT AATACAAGAC 
CAACTTAATG AAAAGACAAC TGAATGCATG GAATTACAAG AGGAGGTTGC 
TCACCTGAAA GAGCAACTTT ACCAAACTCT TCAAGCTAAG GATTCACTGT 
CAAATAGCAT TATGATGCAG AAGAATGCAG GAATTAACCA TGAAACTGAT 
AATCATGCTG ATCAAGAACT ATCAGTTCCT AGAGAGGTCC CTGGTGAAAC 
GTCGCCAAAA GAACCACAGT CAGTTGAGAT TGATGAGCTG AAGCAGAAGG 
TGTGTGAGCT GATTGAAGTA AAAGCTCAAC TAGAGACTCG CAACCAGAAG 
CTACTAGAGG AAAGCACGTA CGCGAAAGGC TTGGCTTCGG CTGCGGGAGT 
TGAATTGAAA GCGTTGTCGG AAGAAGTCAC CAAGCTCATG AACCAAAACG 
AGAAGCTTGC TTCTGAGTTG GCATCGGTGA GAAGTCCAAC CCCGCGTAGA 
GCCAACAGTG GACTGAGAGG TACTCGGAGG GATAGCATCA GTAGACGACA 
TGAGCCAGCT CCAAGAAGAG ACAACAACGC AGGCTACGAG AGAGAAAAGG 
CATTAGAAGC TGTGCTTATG GAGAAGGAAC AAAAGGAAGC AGAACTCCAA 
AGGAGAATTG AGGAGTCGAA GCAAAAGGAA GCCTTCTTGG AAAGTGAACT 
TGCAAACATG TGGGTTCTAG TGGCAAAACT GAAAAAGTCT CAAGGCCATG 
ATCTTGAGGA TTTTGACACC AAATATATTG GCTCGTAACA TCATAACTCT 
AGGCTAATTA ATTATTAGTA GTGCGACTGG CTTGGGTACG TCTGTATGTA 
AGATAAGAGA TTTATACCAG GTTTCCTGTT GCAGTGTGAA TTAGTTCCCA 
TCTTGTATAT TCGCCGGTTG ATCAAAGTTG TGAGGCCTTG TTGGGCTGAT 
GTGCTGAGAG CTTCCATAAT TGCTGCAATG GGTTTTTGGA TTCTCCTGTC 
ACTGGTGCCC CTACCAAATA TATCTACTAA CATGTATTGG CTCTGCCCAT 
CCTGCACTTG GGGAGAACAT CGGTTTGTGA ATATATTCCG CGTGAGTGAA 
TCACATTGAT TGTATCATCA GTTAGCCTTT TGTAAGTTTT TCCTGTGGGA 
TGCTTGCTTC AGTAATAATG TAATAGTCAG GCCTCTTGTG GTCCGGCGTT 
GGTTTTGGAA ATGCAAACGT TTGCTTTGTC

Gene models with high sequence identity

AT3G12020.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
E-value: 2e-125; Score: 447.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	ARGININE/SERINE-RICH SPLICING FACTOR	2.3e-89
HMMPanther	KINESIN FAMILY MEMBER 11	1.2e-53
HMMPanther	KINESIN HEAVY CHAIN	1.2e-53
ProfileScan	RNA recognition motif, RNP-1	17.933
ProfileScan	RNA recognition motif, RNP-1	9.047
HMMSmart	RNA recognition motif, RNP-1	2.3e-23
HMMSmart	RNA recognition motif, RNP-1	4.4e-07
HMMPfam	RNA recognition motif, RNP-1	6.6e-18
HMMPfam	RNA recognition motif, RNP-1	1.8e-09
superfamily	RNA-binding domain, RBD	2.1e-22
superfamily	RNA-binding domain, RBD	5.6e-14
Coil	coiled-coil	0
Coil	coiled-coil	0
Coil	coiled-coil	0
Coil	coiled-coil	0
Coil	coiled-coil	0
Gene3D	Nucleotide-binding, alpha-beta plait	1.5e-23
Gene3D	Nucleotide-binding, alpha-beta plait	9.6e-06

See the detailed result >

AT3G12020.1

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G06670.1); Has 40862 Blast hits to 28121 proteins in 1485 species: Archae - 327; Bacteria - 3144; Metazoa - 20118; Fungi - 3973; Plants - 3090; Viruses - 66; Other Eukaryotes - 10144 (source: NCBI BLink).
Link: InterPro Scan - TAIR