K01537

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01537

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01537

Determination of introduced cDNA(s)

  • J013144N02 - Rice Full-length cDNAs - Original: J013144N02

    full reading [+] show sequence

    Nucleotide sequence: J013144N02 - full reading 
    GGCTGCTAAC CTCGCCCCAC TTTCCCCGCC TCGGGTCGCG CCGCCGCGTC 
    CCCGCCGCGC CGCGACGCGA CGCAACGCAT GCCCCCCAAC CCGACTCCGC 
    CGCGGCGCGC GACGACGACG ACGACGAGGG CGACCAGCGG CGTCCGCCGG 
    GGGGAGGAGG AGCAGGGGGG CATGGCGGTG TCGGCGTCGG CGGGGGAGGA 
    GGAGGAGGCG TTCGAGGAGG TGGACCCGAC GGGGCGGTTC GGGCGGTACG 
    CCGACGTGCT CGGCCTCGGC TCCGTGAAGA AGGTGTACCG CGGGTTCGAC 
    CAGGAGGAAG GGATCGAGGT GGCGTGGAAC CGCGTGCGGC TGCGCGCGCT 
    CGCCGACCGC GACCCGGCCA TGGTGGAGCG CCTCCACGCC GAGGTGCGCC 
    TCCTCCGCTC CCTCCACCAC GAGCACATCA TCGGCTTCCA CAAGGTCTGG 
    CTCGACCGCG ACGCCGGCGT GCTCAACTTC ATCACCGAGG TCTGCACCTC 
    CGGCAGCCTC CGCGAGTACC GCGACCGCCA CCGCCACGTC TCCGTCAAGG 
    CGCTCAAGAA GTGGGCGCGC CAGATCCTCC TCGGACTCGA CCACCTCCAC 
    ACCCACGACC CCTGCATCAT CCACCGCGAC CTCAACTGCA GCAACGTCTT 
    CATCAACGGC AACACCGGCC AGGTCAAGAT CGGGGACCTC GGGCTGGCGG 
    CGATCGTGGA CAAGACCCAC GTGGCGCACA CGATCCTGGG CACGCCGGAG 
    TTCATGGCGC CGGAGCTGTA CACGGAGACG TACACGGAGT CGGTGGACAT 
    CTACTCGTAC GGGATGTGCG TGCTGGAGAT GGTGACGCGG GAGATGCCCT 
    ACGCCGAGTG CGACAGCGTC GTGCAGATCT ACCACAGCGT CACCCGGGGC 
    GTCCCCCCCG CCGCGCTCAA GCGCATCAGG GACCCCGAGC TCCGCGCCTT 
    CATCGAGCGC TGCATCGGTC AGCCCCGGAA CCGGCCCTCC GCCGCCGAGC 
    TCCTCCGCGA CCCCTTCTTC GCCGGCATCG ACGACGACGA TAGCACCGGC 
    ACGCTCGGCT AGCCTGTTAA CCAGCTGGGT AGTACTAGAA ATTATTGTAT 
    GTGAATTCGA TTGGAAACAA ATAAACGTTC TAAACGAATT AAGCTCCAGC 
    GAGTAGCAAA TGTTTATAGG TTCATGTCTC ACCGGCGCTC GAGCTGTAGC 
    CTGTAGCTTT GGATGTGGTT AATTAGTGGC TAGTACTGTA GTATTTATTG 
    TACTGTTTGT TCTTTGGTTT GTACTGATTT GATTCATGAG CTTCAAAGAA 
    ATGGAAGATG AGGAGCTGT

    Gene models with high sequence identity

    1. AT5G55560.1 [+] show detail - Protein kinase superfamily protein
      E-value: 2e-117; Score: 419.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.1e-19
    Gene3D no description 4.1e-44
    superfamily Protein kinase-like domain 1.2e-65
    HMMPfam Serine/threonine-protein kinase-like domain 1.5e-47
    ProfileScan Protein kinase, catalytic domain 40.244
    HMMPanther SERINE/THREONINE-PROTEIN KINASE WNK-RELATED 3.6e-126
    HMMPanther SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO 3.6e-126
    HMMSmart Serine/threonine-protein kinase domain 2.5e-52
    HMMSmart Tyrosine-protein kinase, catalytic domain 9.9e-13

    See the detailed result >

    AT5G55560.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: with no lysine (K) kinase 3 (TAIR:AT3G48260.1); Has 100897 Blast hits to 100061 proteins in 3189 species: Archae - 71; Bacteria - 9572; Metazoa - 37309; Fungi - 9559; Plants - 27616; Viruses - 356; Other Eukaryotes - 16414 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR