K01411

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01411

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01411

Determination of introduced cDNA(s)

  • J033124L02 - Rice Full-length cDNAs - Original: J033124L02

    full reading [+] show sequence

    Nucleotide sequence: J033124L02 - full reading 
    GGGCGCAAAC AGTACACGCT CTCCTCCTCC TCCTCGCTGT CTCCCACTCC 
    CATCCCAATG GCGGCGGCGG CGGAGGACGT GGAGTTCGTC GACTACGACC 
    GCGACGAGGA GGAGGAGGAG GACGCCATGG ACGAGGTCGA TCGGGGCGGT 
    GGCCGCGGCG GGCGCGCGCT ACCCGTACCC CACATCGTCT CCCAGGGCGT 
    GATGCGCTCG CGCGGCCGCC TCCTCGGCCG CAGCACCTCC GTGCTCGCCT 
    CCAACCGCGA CCGCTTCGAC TCCCTCGCCG ATGCCGGCAA CCCCGGCCAC 
    GGCCCACAGC GCTCTATTGA AGGATGGATA CTACTGGTCT CTGGAGTCAA 
    AGAAGACGCG GAAGAAGATG ATCTGTACAA CACTTTCAGT GATTTTGGTC 
    ATGTTAAGGA CCTACATTTA AATCTGGAAC GCCGCACTGG ATATGCCAAG 
    GGATATGCAT TAGTTGAATA TGAAAGTTTT GAGGAAGCAC AAACTGCAAT 
    CAAAGCAATG AATGGGACTC AGCTGTTAAC AAGGACTGTC TATGTTGACT 
    GGGCATTCAG CAGAGGTCCT ATACAGAAAC TCACCAGTAC AAGGCCATTA 
    CATCGGCGAT CTCGGACTCC ACCTCGCAGG CTTGCTGCCT TGACATGTTG 
    ACTGGGAGCT ACTATGTCCG CAATCCTGAA TGTTCTCGGT CTGTGTTTTT 
    TGATAGATGG TACGAACGTA GTCTTAACCG ATGTATGGTG TGATATATCT 
    TCCAGATCCA GCCCCCCTGA GTCTTGATTC TGCTATCCTT ATATATCTGC 
    ACTAAGTTTG ATCAACTTTG TTTGTTGAAC TATGTTCTCG GTTGCTGGCC 
    TGTGGTAGAG GCTGTTGTAC TGACTGAGTA CGCTAGCTAG AAGGTATATT 
    GTGTAGTGAT GACGTTGAGA TGGAAGTGTC TGCCGACTTA AAAGCCTACT 
    ACTACATTTT AAGGAAAACA ACTTTCGT

    Gene models with high sequence identity

    1. AT1G51510.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 1e-35; Score: 147.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA recognition motif, RNP-1 16.364
    Gene3D Nucleotide-binding, alpha-beta plait 7.9e-26
    FPrintScan RNA binding motif protein 8 1.6e-13
    FPrintScan RNA binding motif protein 8 1.6e-13
    FPrintScan RNA binding motif protein 8 1.6e-13
    FPrintScan RNA binding motif protein 8 1.6e-13
    HMMPanther SPLICEOSOME ASSOCIATED PROTEIN 7e-15
    HMMPanther RNA-BINDING PROTEIN 7e-15
    HMMPfam RNA recognition motif, RNP-1 1.5e-16
    superfamily RNA-binding domain, RBD 7.8e-24
    HMMSmart RNA recognition motif, RNP-1 3e-19

    See the detailed result >

    AT1G51510.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Curator Summary
    This gene is predicted to encode a protein involved in the exon junction complex. Though there is a predicted RNA binding motif, in the Drosophila ortholog (33% identity), this motif mediates interactions with Mago and is not available for RNA binding. The Arabidopsis Y14 protein appears to be predominantly nucleolar, but there is also some evidence for its presence in the cytoplasm.
    Computational Description
    Y14; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: nucleoplasm, exon-exon junction complex, nuclear body, nucleolus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA-binding motif protein 8 (InterPro:IPR008111); BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 (TAIR:AT5G64200.2); Has 11259 Blast hits to 10017 proteins in 625 species: Archae - 2; Bacteria - 976; Metazoa - 6273; Fungi - 1165; Plants - 1793; Viruses - 0; Other Eukaryotes - 1050 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR