K00924

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00924

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K00924

Determination of introduced cDNA(s)

  • J033040K07 - Rice Full-length cDNAs - Original: J033040K07

    full reading [+] show sequence

    Nucleotide sequence: J033040K07 - full reading 
    GTCGCGAGCC CGAGTTGCAC GGCACCACCA CCGCCTTCTT CCTTCACTCG 
    ACCCGACCGC CGTCTCGTCC GTCTCCCCCG CTTCCTCCGC CTCCAAAACC 
    CCCCCATCCC AACCCGACCT CCTCACTCGC CCTCCCCTCG CGCTTCGCTT 
    CGCTCCGATC CGACCGCCGC CGCCGCCGCC GCCACAGCGA GAAGAGAGAG 
    AGGGAGATGG CGGGCGGGGA GAAGGTGGAC TACGTGTTCA AGGTGGTGCT 
    GATCGGGGAC TCCGCCGTCG GCAAGTCCCA GATCCTCGCC CGCTTCGCCC 
    GCAACGAGTT CTCCATCGAC TCCAAGGCCA CCATCGGCGT CGAGTTCCAG 
    ACCCGCACCC TCCTCATCGA CCACAAGTCC GTCAAGGCCC AGATCTGGGA 
    CACCGCCGGC CAGGAGAGGT ATAGAGCTGT CACGAGTGCA TACTACAGAG 
    GAGCATTGGG AGCTCTCCTA GTCTACGATA TCACCAAGCG CCAGAGCTTT 
    GATCACATCC CTCGCTGGCT GGAGGAGCTC CGTGGCCATG CGGACAAGAA 
    CATAGTCATC ATGCTGGTTG GCAACAAGAG CGATCTTGAA GACGAGCGGG 
    CCGTGAGCAC CGAGGATGCC AAGGAGTTTG CTGAGAAGGA GAACCTCTTC 
    TTCCTGGAGA CCTCCGCTCT GCAGGCCACC AACGTCGAGA ACGCCTTCCA 
    GACCGTCCTG TCAGAGATAT TCAAAATTCA CAGCAAGAAG AACATGGCAG 
    CGGACCCAAA AGCAAACGGC GCTGCCCCAT CGCTAGCAGG GAAGAAGGTC 
    GTCGTCCCGG GCCCAGCGCA GGAGATCCCC AAGAGCAAGT GCTGCAGTTC 
    CATGTGATCT TACTCTACTC AGATTCAGCT GTATTTGTGT GCCTCTTTTT 
    GAGAATTTTC ACGCGATCTT TCTGGATGTA CATCCCTGCT CAAATAGCTC 
    TAGGCTGCGA GTATTGTTGG ACTATTGGTT GTTTCGGTGA TCAGGTGGAC 
    GGGATAGCTT AGAATTTGTG ACATTTTGTC ACTTCTCTCA GCTGGAGTAG 
    GGTGCGAGCA GAGGAGCTCT ATTTTTCATA GGAGTGGGTT AATTTGTGGG 
    GGTTAATTAC CAATAGCCAT GTATGCCGAT TGTTTTACAT TTCTTAAATC 
    CTTTATGTAT TGTTACACGT ATTACTATTA ATATCTACTT GCTGCTATGA 
    CACCG

    Gene models with high sequence identity

    1. AT5G65270.1 [+] show detail - RAB GTPase homolog A4A
      E-value: 2e-89; Score: 326.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Rab11-related 5.6e-92
    HMMPanther RAS-RELATED GTPASE 5.6e-92
    ProfileScan Small GTPase 35.905
    HMMSmart Ras small GTPase, Ras type 3.5e-30
    HMMSmart Ras small GTPase, Rab type 1.1e-105
    HMMSmart Small GTPase, Rho type 4.7e-11
    HMMSmart Ran GTPase 4.7e-06
    HMMPfam Ras 3.6e-62
    HMMTigr Small GTP-binding protein 3.9e-37
    superfamily P-loop containing nucleoside triphosphate hyd 2.8e-64
    FPrintScan Ras GTPase 2.6e-40
    FPrintScan Ras GTPase 2.6e-40
    FPrintScan Ras GTPase 2.6e-40
    FPrintScan Ras GTPase 2.6e-40
    FPrintScan Ras GTPase 2.6e-40
    Gene3D no description 3.4e-63

    See the detailed result >

    AT5G65270.1

    Model type
    Protein coding
    Short Description
    RAB GTPase homolog A4A
    Computational Description
    RAB GTPase homolog A4A (RABA4a); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A4B (TAIR:AT4G39990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR