GT9148

CSHL Arabidopsis genetrap mutant lines

Original: GT9148

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT9148

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2112981 [Map]; Strand: w
      • AT3G06670.1 - [+] show detail - binding
        Distance: 0; Region: intron1 (CDS)
      • AT3G06670.2 - [+] show detail - binding
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT9148 - 3-prime edge 
    TAGTCTTGAT TAGTATAATT TATTGTAGAG CTTCTGTATT CATATTAAAT 
    CACTCCTGCT TCTGAGCTGT GTTATTTATT GATGAAATTC ATGGTGACCA 
    CAATTCAATA GGTATCTCAG TTTTAAGAGC ACACAGAAGA TGAGATTTGT 
    AATTTGACTA GTTTCTATGG TTCACTTGTT GTGTATTAGT TTCAGTGGGG 
    TTTAGCGTAG GGCGTAGCGT AGTTCTCTAG TTTCTGTGGG TGGTTGTCCT 
    CTTTTGAACA GTGTACCATA GCCGATAATT TAGAGTAGCT ATTCGACCAT 
    GTGGTAGACC TTACTTCTTC AGATAAAACG GATCTCAATT ATTGAGACAC 
    TAGAAAGTTG CGTTGTTTTG ACGAATTGTG TTGAATTGAG ATGGAAGGGT 
    TTCTTTTCTT TCTTCCAATA CGCTGTTGGA TCATCCTTCT TACTCTTGTA 
    TTCATTCTTC AGAGAGTGAA AGTCTATCAT TTGAATGAAG ATGGTAAATG 
    GGATGATCGA GGAACTGGGC ACGTAAGCAT CGACTTTGTG GAGGTCTGTT 
    GTGATTCTAA TTGACTTCCT GAATTCCATC TGCTGCGGGT ATTCTGCAGC 
    ACTTATTATG TAAAACATA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2112981 [Map]; Strand: w
      • AT3G06670.1 - [+] show detail - binding
        Distance: 0; Region: intron1 (CDS)
      • AT3G06670.2 - [+] show detail - binding
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT9148 - 3-prime edge 
    TAGTCTTGAT TAGTATAATT TATTGTAGAG CTTCTGTATT CATATTAAAT 
    CACTCCTGCT TCTGAGCTGT GTTATTTATT GATGAAATTC ATGGTGACCA 
    CAATTCAATA GGTATCTCAG TTTTAAGAGC ACACAGAAGA TGAGATTTGT 
    AATTTGACTA GTTTCTATGG TTCACTTGTT GTGTATTAGT TTCAGTGGGG 
    TTTAGCGTAG GGCGTAGCGT AGTTCTCTAG TTTCTGTGGG TGGTTGTCCT 
    CTTTTGAACA GTGTACCATA GCCGATAATT TAGAGTAGCT ATTCGACCAT 
    GTGGTAGACC TTACTTCTTC AGATAAAACG GATCTCAATT ATTGAGACAC 
    TAGAAAGTTG CGTTGTTTTG ACGAATTGTG TTGAATTGAG ATGGAAGGGT 
    TTCTTTTCTT TCTTCCAATA CGCTGTTGGA TCATCCTTCT TACTCTTGTA 
    TTCATTCTTC AGAGAGTGAA AGTCTATCAT TTGAATGAAG ATGGTAAATG 
    GGATGATCGA GGAACTGGGC ACGTAAGCAT CGACTTTGTG GAGGTCTGTT 
    GTGATTCTAA TTGACTTCCT GAATTCCATC TGCTGCGGGT ATTCTGCAGC 
    ACTTATTATG TAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2113121 [Map]; Strand: w
    Flanking Genome Sequence: GT9148 - 5-prime edge 
    GTGAGCCAAT AAAGGAAAAC AAAGCTAGAG CTAGAGACAC ACCTGCATCG 
    AATTGGTATT AGATTGAGAC TTTTCCGGAG CGCCCATAAC TGATTACCAA 
    CCTCCAACAC CAAATCGAGC CGAGAAAGTG AAAATAATGA CCGACGGTAG 
    TAAAGTTAGG GTTTTGGAGC AACGAGAAAT GATAGGAATT AGACGGCGTC 
    GATATAGGCG GGAGATTCAG TTCTCGAAGG GGACGAAATC AAAGAAAAAA 
    GAAACCCTAA TTGCCAGACG GAGCATCAAA AAAACATTGA CATTCTCTCT 
    CTAGCTTTTA TTTTCTTCTG CGAAAGCTTT CCCCAACCTT CGAAACGCGA 
    AAGAAGAGAG AAGAGAGAGG AGAAAAAAAA AAAAAAAAAA AAATTT

AT3G06670.1

Model type
Protein coding
Short Description
binding
Computational Description
binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF625 (InterPro:IPR006887); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49390.1); Has 3148 Blast hits to 2569 proteins in 332 species: Archae - 0; Bacteria - 112; Metazoa - 1464; Fungi - 567; Plants - 205; Viruses - 18; Other Eukaryotes - 782 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06670.2

Model type
Protein coding
Short Description
binding
Computational Description
binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF625 (InterPro:IPR006887); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49390.1).
Link
InterPro Scan - TAIR