GT9064

CSHL Arabidopsis genetrap mutant lines

Original: GT9064

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT9064

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7942612 [Map]; Strand: w
      • AT1G22490.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -2020; Region: intergenic
      • AT1G22500.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -6864; Region: intergenic
    Flanking Genome Sequence: GT9064 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TGAATAACAT 
    TAGGTACACG TATTCAAAGG AGACAAGATT ACTATAGCTT AAATTCAATT 
    TGAAGTGCAT ACAACAAGAT TCTTTGTATC ATCATGAAAA GTTTGTCCTG 
    CAGTTTTATG TTCACATATT ATTTATTTTT TCGGCAAATT GGTTCAGATT 
    TTAAGATTCC AAGTGTCCGA CCAAATTTGA TTACAAAACG CAGCCTAGTC 
    ACATCTATCT AATTCTTTAA ATTTTGTTTT CATCTCACTC GACAATTCTA 
    CTATTATATA TTCCCAGAGT GATTAGATCA GAATAATCAA AAGATGCCAC 
    CTAATTTATA TACATAACTT TTTTGGTTTT TGATGTTGAA AAGTAGTGAC 
    AAAAGATTTT TAATAGACCA TCATTTTATA ACATGCAAGT AAATATCTCG 
    ATTTAAATAT ATTTTTAATA ACATCACCAA ACAAATTTGT TAAAACCTGA 
    CATAAAGTGA TCCCCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7942671 [Map]; Strand: w
      • AT1G22490.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -2079; Region: intergenic
      • AT1G22500.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -6805; Region: intergenic
    Flanking Genome Sequence: GT9064 - 5-prime edge 
    CCTACTTTCT CCCTAATGTT ATTTGTACAT CATCAAACTC AAAATTAATT 
    GGTCGATTAT TATTTAATAT TTAAAAATTT GTTTCGATCA TCCTTTATGT 
    TTATTACTTT TTAATCATTT TAGTTCATCG TTTAACATGT AGATATTTTC 
    GCACGAGTGA TATTTATTTT CTATCGATCA TAGCAGAGTT TTGTTTTTGA 
    TGCAGACGTT TAAAGAGATG TTTTTTCTTT TCTGAAAAAA GTAAAAACAA 
    TTGAGAGGAG AAGCCATGAG CATATGTCCA GAAAAGTCCA TGTAACCTCA 
    CAAGCTTCTA TTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7942681 [Map]; Strand: w
      • AT1G22490.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -2089; Region: intergenic
      • AT1G22500.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -6795; Region: intergenic
    Flanking Genome Sequence: GT9064 - 5-prime edge 
    CCCTAATGTT ATTTGTTCTC ATCAAACTCA AAATTAATTG GTCGATTATT 
    ATTTAATATT TAAAAATTTG TTTCGATCAT CCTTTATGTT TATTACTTTT 
    TAATCATTTT AGTTCATCGT TTAACATGTA GATATTTTCG CACGAGTGAT 
    ATTTATTTTC TATCGATCAT AGCAGAGTTT TGTTTTTGAT GCAGACGTTT 
    AAAGAGATGT TTTTTCTTTT CTGAAAAAAG TAAAAACAAT TGAGAGGAGA 
    AGCCATGAGC ATATGTCCAG AAAAGTCCAT GTAACCTCAC AAGCTTCTAT 
    TTTTCATCTC ACT

AT1G22490.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G72210.1); Has 1544 Blast hits to 1534 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 34; Plants - 1460; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22500.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, cotyledon, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72200.1); Has 9627 Blast hits to 9604 proteins in 288 species: Archae - 0; Bacteria - 2; Metazoa - 2532; Fungi - 813; Plants - 4919; Viruses - 76; Other Eukaryotes - 1285 (source: NCBI BLink).
Link
InterPro Scan - TAIR