GT8776

CSHL Arabidopsis genetrap mutant lines

Original: GT8776

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT8776

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 11106539 [Map]; Strand: c
      • AT3G29140.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 395; Region: intergenic
      • AT3G29150.1 - [+] show detail
        Distance: 1774; Region: intergenic
    Flanking Genome Sequence: GT8776 - 3-prime edge
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAAACCCAA TTAGTCAATT 
    ACACATCCAA AAACTTTGAT TAAATGCTCG TTTAAATTTT CGCTTGGGTT
    CTTCATATAG TATCATCATT AGGGTTTAGA TATCTTGAAT CAATGGAGTT
    TTGTGATTAG AAAAAGATTT TGAAATAAGA GATTTGATTT TTTTGGGCAT
    AAATGTTAGA TTGAGAAAGC AACGAATAGG AGGAAGAAGA TGAGATGATT
    CAAGGGTAAA ATCGTCCAAT AATCGAATAA AAATGCCCAT CTGCATAAGC
    CTAGGTAAAA AGTGTTTATT TTCAAAGATT TGGGCCAGAA AGTGTCTATT
    TCTATAAAAA ATTAAAAACC CCGAGTTTTG TGAGAATACG AAGTTTTTCA
    CAAGACTATA TAGTATATAT TTTTTTTTAT CCATATATAC TGTATAGTCT
    GTCTTTTTCA ATGAGACAAA AAAAATCTCT TTACTCATGG
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 9635045 [Map]; Strand: c
      • AT3G26290.1 - [+] show detail - cytochrome P450, family 71, subfamily B, polypeptide 26
        Distance: -575; Region: promoter
    Flanking Genome Sequence: GT8776 - 5-prime edge
    CTTGGGAATT ATTTTAGCTT CATCGTAGCA TACATCGGAA TCGGTGGCTT 
    GTGCGTGCCC AAATTAATTT CAATTTCACT AATGAGATCT TGTTAAAGCT
    TCTTACATAC AAAAATTGGT TTCAATGAAG AAAGAAGAGT AAAGGGCAAA
    TTCGTCTTTT AGATAAAGCA AAAGTACACA TCTATATAAA AACTCAAGAA
    AATGCCTAAA TTCACAATAC CCCTCACATA ATTGTGCCAA TCCCATAATT
    GATCCCATAA AACTCTTCTA AGAAAGTTGT CCGGACCATA TATTGTTATA
    TCTATCTTTC GTGAACCCCA CTTCGGCCAC TTCCTTTAAT TCATTATTTG
    TTTTATTAAG AAGATACTAT TTTCGATGAT GACAAGGTAG TTGAAATGTC
    TCCAAAATTT GTATTAAATT TCACGGTTCT AGCTCATTAT TGTGGTTTAT
    ATAACATAAT GGCAAGAAGA AAAGAAAGAA AAATGTCAAC GTTAGTATCG
    TAGGTTAGCT TTGCTCTCTT ATGCAGTGAT CAATTATTCA CATAAATGTT
    TTGTCAAATA TTTAAGTCGA CTTCATGAAT TAAATTAGTG AAGTGAACAT
    TGCTCAAAGT TGTATATATT AAGCCATGAG CTTTCCTCAT GAATAATAAT
    AACTCAGTAA AACAAAATAA CATACAAATG GATAGCATTT GGATTCTATC
    ACTTCTCTTC T
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 9635087 [Map]; Strand: c
      • AT3G26290.1 - [+] show detail - cytochrome P450, family 71, subfamily B, polypeptide 26
        Distance: -617; Region: promoter
    Flanking Genome Sequence: GT8776 - 5-prime edge
    TGATTGGGTT GTTTGTTATC TGGATTTTGA AAGAGAAATA GTCTTGGGAA 
    TTATTTTAGC TTCATCGTAG CATACATCGG AATCGGTGGC TTGTGCGTGC
    CCAAATTAAT TTCAATTTCA CTAATGAGAT CTTGTTAAAG CTTCTTACAT
    ACAAAAATTG GTTTCAATGA AGAAAGAAGA GTAAAGGGCA AATTCGTCTT
    TTAGATAAAG CAAAAGTACA CATCTATATA AAAACTCAAG AAAATGCCTA
    AATTCACAAT ACCCCTCACA TAATTGTGCC AATCCCATAA TTGATCCCAT
    AAAACTCTTC TAAGAAAGTT GTCCGGACCA TATATTGTTA TATCTATCTT
    TCGTGAACCC CACTTCGGCC ACTTCCTTTA ATTCATTATT TGTTTTATTA
    AGAAGATACT ATTTTCGATG ATGACAAGGT AGTTGAAATG TCTCCAAAAT
    TTGTATTAAA TTTCACGGTT CTAGCTCATT ATTGTGGTTT ATATAACATA
    ATGGCAAGAA GAAAAGAAAG AAAAATGTCA ACGTTAGTAT CGTAGGTTAG
    CTTTGCTCTC TTATGCAGTG ATCAATATTC ACATAAATGT TTTGTCAAAT
    ATTTAAGTCG ACTTCTGAAT TAAATTAGTG AAGTGAACAT TGCTCAAAGT
    TGTATATATT AAGCCATGAG CTTTCCTCAT GA

AT3G26290.1

Model type
Protein coding
Short Description
cytochrome P450, family 71, subfamily B, polypeptide 26
Curator Summary
putative cytochrome P450
Computational Description
"cytochrome P450, family 71, subfamily B, polypeptide 26" (CYP71B26); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily B, polypeptide 34 (TAIR:AT3G26300.1); Has 33376 Blast hits to 33121 proteins in 1698 species: Archae - 51; Bacteria - 3546; Metazoa - 11995; Fungi - 7038; Plants - 9514; Viruses - 3; Other Eukaryotes - 1229 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G29140.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sperm cell; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G29150.1

Model type
Pseudogene
Curator Summary
pseudogene of F-box family protein
Link
InterPro Scan - TAIR