GT8773

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

tiny plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT8773

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 2; Position: 13219300 [Map]; Strand: c
- AT2G31060.3 - [+] show detail - elongation factor family protein
  Distance: -576; Region: promoter
- AT2G31060.1 - [+] show detail - elongation factor family protein
  Distance: -733; Region: promoter
- AT2G31060.2 - [+] show detail - elongation factor family protein
  Distance: -715; Region: promoter

TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGTGG TAAACAAGGT 
CAATTCTCAT ATGCACCAAG GGACATATAG TTCATAAGAT TGTTTGTTTC 
TTAAAGGAAG CATTGGACAA AGCTTGTTTT TACTTTGCTG CTCTAGACCT 
ATATATTTGA GGTTTCACTG CTTATGACTA GGCAAGTTAT CCACAATTTC 
GTATGTACTA TGTATCTTGG ATTTTATGTT CAATGAAAAT TCATCCATTT 
CATTGTCTAT CAAAGCTAAA TACAAAGTTA TGGCTCTTGG AATTTGTGAA 
CATGTTTGGA TTGCCTATAT TATGTAAAAT TATTTTGGTT TTATATTATG 
TAAATATATA AAGCATGCTT CTTATGCTCT CTCTGTGTAC TCTACAGTGA 
CAACACTTTA GCT

3 prime edge [+] show sequence
1. Chromosome: 2; Position: 13219594 [Map]; Strand: c
  - AT2G31060.3 - [+] show detail - elongation factor family protein
    Distance: -870; Region: promoter
Flanking Genome Sequence: GT8773 - 3-prime edge
```
TGTGAACATG TTTGGATTGC CTATATTATG TAAATATATA TTTTGGTTTT 
ATATTATGTA AATATATAAA GCATGCTTCT TATGCTCTCT CTGTGTACTC 
TACAGTGACA ACACTTTAGC TC
```

5 prime edge [+] show sequence

Chromosome: 2; Position: 7284364 [Map]; Strand: w
- AT2G16780.1 - [+] show detail - Transducin family protein / WD-40 repeat family protein
  Distance: -718; Region: promoter
- AT2G16790.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
  Distance: 0; Region: exon5 (CDS)
- AT2G16790.2 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
  Distance: 0; Region: exon5 (CDS)

TACCTTCCAA TAAAACAAAC TTAACCTTGC AACTCGTATA GCTTCCCGGT 
TTGTAATCAG GATCAGAGCC TCTCAAGATT TCTCTATACT GTTTTCTCAA 
AGAAGAACAT GCGAGAACAA CGGTTTCTCC ATCGAGTAAA CGTTTTCGCA 
AACTCTCTTG TATTTTTTCA AGCCATGGCA TTCGGTCTTC ATCTGAAAGA 
GCAATGCCTT GACGCATCTT ATCTAGTTGA ACAATTAGTG TTAACACATG 
AAATTTTCCC AACAGATTCG TCAAAAGTAT ATCGATTCTG TTACCTCTGT 
TTGATAAAGA ATGAAAATCA TCAGCATCAA GAAAATCGCA AGATAGAGCT 
TTCCCCAACA TTTTACCTAT GGTACTAACA AAGTGAAACA ATACAATAAA 
CATCAATGAT TTTTCTTCAA ACTAGAAAAT ATAGTACAAA TGAGAAGAAG 
AATATAAACA GCTTACGATT TCCCTGCGCC ACTTACGCCC ATAAGCACAA 
TGACTTTACC TATAACTATG ACAATGAGCA ACAAAACTGA TGAGATCATT 
CACATTAATG GACCATAATA ACAATATTGG AGCTTACCGT CATTTTTAGC 
CGACATGCTT GATGAAACAG GTTTTGGGTG ATTCTTGAAG AAAACAATCT 
GTGATCAAGA AAAGTAAACA TATCTATTAA CTCTCAATCT TAGCTTATAA 
TTCTTCAATA TTTCCTAAT

AT2G16780.1

Model type: Protein coding
Short Description: Transducin family protein / WD-40 repeat family protein
Curator Summary: Encodes a WD-40 repeat protein similar to yeast MSI1.
Computational Description: MULTICOPY SUPPRESSOR OF IRA1 2 (MSI2); CONTAINS InterPro DOMAIN/s: Histone-binding protein RBBP4 (InterPro:IPR022052), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT4G35050.1); Has 43623 Blast hits to 25846 proteins in 733 species: Archae - 34; Bacteria - 4140; Metazoa - 17646; Fungi - 10305; Plants - 5712; Viruses - 0; Other Eukaryotes - 5786 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G16790.1

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: shikimate kinase activity, kinase activity, ATP binding; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623), Carbohydrate kinase, thermoresistant glucokinase (InterPro:IPR006001); Has 2254 Blast hits to 2254 proteins in 918 species: Archae - 9; Bacteria - 1822; Metazoa - 57; Fungi - 155; Plants - 35; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G16790.2

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: shikimate kinase activity, kinase activity, ATP binding; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623), Carbohydrate kinase, thermoresistant glucokinase (InterPro:IPR006001); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G31060.1

Model type: Protein coding
Short Description: elongation factor family protein
Computational Description: elongation factor family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), GTP-binding protein TypA (InterPro:IPR006298), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor family protein (TAIR:AT5G13650.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G31060.2

Model type: Protein coding
Short Description: elongation factor family protein
Computational Description: elongation factor family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), GTP-binding protein TypA (InterPro:IPR006298), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor family protein (TAIR:AT5G13650.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G31060.3

Model type: Protein coding
Short Description: elongation factor family protein
Computational Description: elongation factor family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein TypA (InterPro:IPR006298), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor family protein (TAIR:AT5G13650.2).
Link: InterPro Scan - TAIR