GT86

CSHL Arabidopsis genetrap mutant lines

Original: GT86

Phenotypes

Morphological phenotypes

Original description

  • small plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT86

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20876877 [Map]; Strand: w
      • AT3G56280.1 - [+] show detail - pseudogene, protein kinase family, contains protein kinase domain, Pfam:PF000...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT86 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCACCGGCT TTGATTATCA 
    TGTCTCCGAT GAACCATGTG GTGCGATTTC CATGTAAATT GAGCAGATCT 
    TGACATTGAA CGGCATGGTT TCGTAATAGA CGATAGGGCT TGTGGGTCTT 
    ACGATGTTGA AATTGATCGA GTTGAAGTGA TGTAAGATCC TCTGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20876984 [Map]; Strand: w
      • AT3G56280.1 - [+] show detail - pseudogene, protein kinase family, contains protein kinase domain, Pfam:PF000...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT86 - 5-prime edge 
    ACGTGGTCGG GTACTGCACT CTCTTGATCT TGATGACTCA GGGTCTTCAC 
    AAAGATGGTT ACGTTCACTG TGATCTCGGG CCAGAGAACA TGCTTATCTT 
    CCCGACCTAC ACTCATGGAG AGCTTTGTGA ACTCAAACTC GCTGATTTCG 
    GCTTAGCAAA AGAGCCTAAT GGACCTAATC CATTGGATGG ATCTCTCTTC 
    GAGGGATGTC CTGCATATTT GGCTCCAGAG GCGGTCGGGC CATGTCGAAT 
    TATTTCGTCT GCGGTTGATA TTTGGTCTTT AGGTGTTATG GTAATCGAGA 
    TGTTGGGGGT TAATGGAGGA GGAAGAAATG ATTACTTGTC ACAGACGCTA 
    TCATCGATGG CTTGGGACTT TGTGAGGAAA TGCAAAGTGC ATGACTGGGA 
    GAGTAGAGCC ACCGCAGAGG AGCTGCTGAG CCATCCTTTC GTTAACCAAA 
    GTATTGGGGT TCCACCGTTT GAGATGCTTC CTGTTCCTTA TTGCTTAACT 
    GATGGAGTGG TTCAAGGAAG GTTTTTCTGA GT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20876987 [Map]; Strand: w
      • AT3G56280.1 - [+] show detail - pseudogene, protein kinase family, contains protein kinase domain, Pfam:PF000...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT86 - 5-prime edge 
    TGGTCGGGTA CTGCACTCTC TTGATTCTTG AATGACTCAA GGGTGTGCAC 
    AAAGATGGTT ACATTCACTG TGATCTCGGG CCAGAGAACA TGCTTATCTT 
    CCCGACCTAC ACTCATGGAG AGCTTTGTGA ACTCAAACTC GCTGATTTCG 
    GCTTAGCAAA AGAGCCTAAT GGACCTAATC CATTGGATGG ATCTCTCTTG 
    GAGGGATGTC CTGCATATTT GGCTCCAGAG GCGGTCGGGC CATGTCCAAT 
    TATTTCGTCT GCGGTTGATA TTTGGTCTTT AGGTGTTATG GTAATCTAGA 
    TGTTGGGGGT TAATGGAGGA GAGANAAAAT GATTACTTGT CACAGACGCT 
    ATCATCGATG GCTTGGGACT TTGTGAGGAA ATGCAAAGTG CATGACTGGG 
    AGAGTAGAGC CACCGCAGAG GAGCTGCTGA GCCATCCTTT CGTTAACCAA 
    AGTATTGGGG TTCCACCGGT TGAGATGCTT CCTGTTCCTT ATTGCTTAAC 
    TGA

AT3G56280.1

Model type
Pseudogene
Computational Description
pseudogene, protein kinase family, contains protein kinase domain, Pfam:PF00069; blastp match of 44% identity and 9.2e-11 P-value to GP|3947676|emb|CAA21067.1||AL031652 dJ1119D9.1 (PAK5 (KIAA1264) (P21-Rho-binding domain containing serine/threonine protein kinase)) {Homo sapiens}
Link
InterPro Scan - TAIR