GT8401

CSHL Arabidopsis genetrap mutant lines

Original: GT8401

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT8401

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1476030 [Map]; Strand: w
      • AT4G03360.1 - [+] show detail - Ubiquitin family protein
        Distance: -178; Region: promoter
    Flanking Genome Sequence: GT8401 - 3-prime edge 
    TAGCTTTCTG GGACACAGTG TTAACGATGA AACGGAGGAT CGAGATGACT 
    CAAGGTATTC CCGTTTCCAG ACAAACACTC TTCTTCAAAC GCAAGCTTCT 
    TGAAGATCAT CTTGATATGT TTGAATACGG CATCTTCCAC AACTCTCGTA 
    TCCTTCTCTT CATCCTCTCT CGACGATAAC CCTACTCAGA ACCAAGTCCC 
    TCAATCTCCA TCAAATCCGA TTCATGATAC AATGATAAAG GTGATCATCG 
    AGAATCAGAG TGGCTCATCG TTCACCATTG ATGTTTCTTT CTGGGACACA 
    GTGTTAATGA TTAAACGGAA GATCGAGATG ACTCAAGGTA CCCCTGTTTC 
    CAAGCAAATA CTTATCTTCA AACGCAAGGT ACTTCAAGAC CATCTTAATA 
    TGTTTGGATG CCAGATACGT CACAACTCTC GTATCCTTCT C

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1311273 [Map]; Strand: c
      • AT4G02950.1 - [+] show detail - Ubiquitin family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT8401 - 5-prime edge 
    GGTGAACGAT GAGCCACTCT GATTCTCGAT GATCACACTT ATCATTGTAT 
    CAATGGTGTT TCAAGATCAA TAAAGACTCT TGAAGACGAG AAAGAGAGAG 
    AGAAAGTGAT TTGACGATAA GTTTATTCGT GTAATCTGGT TTAAATATCA 
    CTTAATAGCA CCTAGTCGAA TAATCTTAAC CGTCGATTGC TCTGCTTGCT 
    GATATGATCC AACGGTTTGA TTGAGCAATC TTGAAATGAC TATGATCCAA 
    CGATCAGATT AAGCAATCTT GAAATGGCTA TATGATCCAA CGGTTAGATT 
    AAGCAATCTT GAAATGGGTT AAAACGCAGC GTCTTGAATA AAATAATTAG 
    ATCCGGCCCA TTAACCCGTC TATGTTGATA GAATCAATTT GAAGAACAAC 
    AACAAAAACG CCATCTTTAT TAGGGTTCTG CTTCAATTAG GCTTTCTTC

AT4G02950.1

Model type
Protein coding
Short Description
Ubiquitin family protein
Computational Description
Ubiquitin family protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin family protein (TAIR:AT4G03360.1); Has 317 Blast hits to 308 proteins in 82 species: Archae - 0; Bacteria - 3; Metazoa - 57; Fungi - 34; Plants - 166; Viruses - 17; Other Eukaryotes - 40 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03360.1

Model type
Protein coding
Short Description
Ubiquitin family protein
Computational Description
Ubiquitin family protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin family protein (TAIR:AT4G02950.1); Has 305 Blast hits to 295 proteins in 81 species: Archae - 0; Bacteria - 3; Metazoa - 39; Fungi - 37; Plants - 169; Viruses - 17; Other Eukaryotes - 40 (source: NCBI BLink).
Link
InterPro Scan - TAIR