GT8382

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

small plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT8382

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 7071308 [Map]; Strand: c
  - AT3G20280.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
    Distance: 0; Region: exon1 (5UTR)
  - AT3G20280.2 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: GT8382 - 3-prime edge
```
TTTTCATCCC TACTAACATC TCCGTCTTCT GCTTCGTGTA ATTTGGGTAT 
TGTTGGCTCC CTACTCTGAT TCCTCAAATT CCTTATTTTT ATTAACCCGC 
GAAAATAAAT TATAAAGAGG GCTTTCAAAA TTTTGAACCT TTCTCTAACA 
ATGGAGATCT CCCTCCTTCC CTTTTTCTTC TCTCTCGA
```

5 prime edge [+] show sequence

Chromosome: 3; Position: 7071221 [Map]; Strand: c
- AT3G20280.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
  Distance: 0; Region: exon1 (5UTR)
- AT3G20280.2 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
  Distance: 0; Region: exon1 (5UTR)

TCTACTTTCT CTCTGTGCAT GCTAGAGAGA GATCGATGAG AGAGGATCTT 
TTGACTTTAC TTTTTTTTGT CCTAGAGAGA TTAATAGAAT AACAATTTTA 
TCCTTTTCTA TTGTTGTTTT GCGTACATAT GAATAATATT TTGATTGTTT 
ACGAAGTTGG GCCCATATTT AACAGGCCTG TAATATAAAT CATTGGGCCG 
TGTCTTGCAA TTGCCTAATG GAAGTTTTCC TTAACCTCTC AAAAAGATGC 
ATTGGTCTTA GGGGGGGAAG TTCCAGATAT AATGCAAGTA GCCAAAGAAA 
TAAAGAGATC TCGTCAAAAC GCTTCTTAGA GGGGAAGTTC CAAACGGTTC 
AAATCACAAT TATGGTTGTC ATTATATTTC TTCAGGCTTA CGTACATGCA 
ATCTAAGAAG CTATATAATA CTTGCTTACT GGTTTGTGCT AGTGCCGATA 
TCGGTACATA CCAAAATGCC ACTATTAACA TAAACAATCT TTATGTTTTT 
GATCGTGAAA TCGCCGGGAA TCGGCAAAGG GAATCCTCTC TTGAGACGTG 
TGTTTACGTA CGGCAAAAAC AAGGCTTCAA GAATCCTAGA CGTAGCAGCC 
TAAC

AT3G20280.1

Model type: Protein coding
Short Description: RING/FYVE/PHD zinc finger superfamily protein
Computational Description: RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G50620.1); Has 11431 Blast hits to 6184 proteins in 707 species: Archae - 24; Bacteria - 2884; Metazoa - 3648; Fungi - 2195; Plants - 284; Viruses - 200; Other Eukaryotes - 2196 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G20280.2

Model type: Protein coding
Short Description: RING/FYVE/PHD zinc finger superfamily protein
Computational Description: RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G50620.1); Has 12041 Blast hits to 6136 proteins in 701 species: Archae - 24; Bacteria - 2898; Metazoa - 3663; Fungi - 2202; Plants - 270; Viruses - 207; Other Eukaryotes - 2777 (source: NCBI BLink).
Link: InterPro Scan - TAIR