GT8145

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

tiny plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT8145

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 1808897 [Map]; Strand: c
- AT5G05990.1 - [+] show detail - Mitochondrial glycoprotein family protein
  Distance: -990; Region: promoter
- AT5G06000.1 - [+] show detail - eukaryotic translation initiation factor 3G2
  Distance: 0; Region: intron1 (CDS)

CAATATGGCT GACTAACGTG TCCACCTATA AAGAAACTTA TGTAAAAATG 
AATACTTGAA TGTGTACAGT TAATAGCCTA GAAAAGAGAA CACAGAATTT 
GTCCACATTC AGAAAAGGCT ACCAACAAGA TACTTATATT GGTGACATAC 
TGACCAATCA CAGAAAGAAG CAGCCATATA TGGCTAATAT GTGATCGGCT 
AATTGGGCAC CTTTGTTATG TTACACAGTT ACAAAAAAAA AACTGGACCC 
AAAGATTTAG TGGATGATCC ATAACCAAAA ACGGGGTTAA ATCCTGTTTT 
AGGGTTGAAA CGAATAACCA ACGACTTTGT TTTAGGGGGG CTTACTGACC 
ATTAACACAA ACAGTAGCCA TAAAGCTAAC ATGTGACTGG TTAATTAGCC 
ACCCTAATCA AAACAGAGCT TATTACCACC GAATCCTAAC AAACTAAAAT 
GCAAAGTTGA AAATTTTACC AGGAGCTTTA ATTCGTT

AT5G05990.1

Model type: Protein coding
Short Description: Mitochondrial glycoprotein family protein
Computational Description: Mitochondrial glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); BEST Arabidopsis thaliana protein match is: Mitochondrial glycoprotein family protein (TAIR:AT3G55605.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G06000.1

Model type: Protein coding
Short Description: eukaryotic translation initiation factor 3G2
Curator Summary: One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3).
Computational Description: eukaryotic translation initiation factor 3G2 (EIF3G2); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Translation initiation factor 3, RNA-binding subunit (InterPro:IPR017334), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3G1 (TAIR:AT3G11400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR