GT7921

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT7921

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 5; Position: 22292335 [Map]; Strand: w
- AT5G54880.1 - [+] show detail - DTW domain-containing protein
  Distance: 0; Region: exon1 (CDS)
- AT5G54890.1 - [+] show detail - RNA-binding CRS1 / YhbY (CRM) domain-containing protein
  Distance: -990; Region: promoter

GTTTTCATCC CTACCTAACT TAAAGCTATC ATGCAAGTTC CAAAGAAGCA 
CACATTCTCT ACCCTATACT CAGAATCCAA ATGATTCGTG TCAATCTTGC 
TGCAACCCGA TCCAATAACC CTGATTAAGA ACTCTGCCTC ATCATGAACA 
TCGAAAACAG TAGTCACACC AACATTCTTA AGCCCTAATC TAGCGATTCG 
AGTAGAATTT AGCGCGTGTT TTCTCTCGAG ACTATGCTGA AGAATAGTAA 
TACTCACCTG ATTATCAAAA CATGGAGATC TCATCTTCTT GCAGAGACAG 
AGCTGGCTAG GTTTATCGCA AGAAGGGCAA GTGGGTCGCT TTGTCCCCAT 
TTTTAGGGTT TTTGAAACTG TGACGCCCTG ACACC

AT5G54880.1

Model type: Protein coding
Short Description: DTW domain-containing protein
Computational Description: DTW domain-containing protein; CONTAINS InterPro DOMAIN/s: DTW (InterPro:IPR005636); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G54890.1

Model type: Protein coding
Short Description: RNA-binding CRS1 / YhbY (CRM) domain-containing protein
Computational Description: RNA-binding CRS1 / YhbY (CRM) domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, C globular stage, F mature embryo stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain-containing protein (TAIR:AT4G31010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR