GT7767

CSHL Arabidopsis genetrap mutant lines

Original: GT7767

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT7767

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1129406 [Map]; Strand: w
      • AT4G02560.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -985; Region: promoter
      • AT4G02560.2 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -985; Region: promoter
      • AT4G02570.4 - [+] show detail - cullin 1
        Distance: 0; Region: exon3 (CDS)
      • AT4G02570.2 - [+] show detail - cullin 1
        Distance: 0; Region: exon3 (CDS)
      • AT4G02570.3 - [+] show detail - cullin 1
        Distance: 0; Region: exon3 (CDS)
      • AT4G02570.1 - [+] show detail - cullin 1
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT7767 - 3-prime edge
    TAATAAAACC TACGTGTAAA GCATCATATA TTGCTCAGAG TCAAATGCTG 
    GCTCATTCAA TCCTTCCAGA ATCCGTTTCA GCTTAGTAAT TCCAGTCTGC
    ATATAGTCCC ATCCTTGCTC CAAGTCAATA GTCTTGCGCT CCATGTTGAC
    AAACAACTTT TCAAGCTCTC CTCAACCTAA GTTAACCAAA GAACAAGGAG
    AAAACCAAAA TTTAGAACAG CAGTATTAAG CAACACAATG AAATGACTGA
    AGCGAGAGAG TCAACAATAT TTATCATTCT TCAGAGGTTA TAATAACACG
    TTAACACCCA CATTATCGAA TGCGAAACGA GTATTATCAC CCAAATCAAA
    CCCAAACTAT CAGATTGTGC GCAAACGAGG ACATAAGCAT CAGAATATAC
    TCGAGAAACA ATCAATCCAT GAGATAAACA CGAAATTACA CAGTAGAAAC
    GCAATCCAGA GACTCCGACG TAACCCTAAC AATCTCGATC CCACAAAAAT
    TCAAATAAAA ACCTAGAAAG ACGAACAATC AACAGAATGA TAAAAAAATC
    AACTGTCGTA TGGAACAAAA CAAGCGAGAA TCCGACAGAA ATAGTGATAC
    CTCGAGATCT TAAACCCTAA T
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1129516 [Map]; Strand: w
      • AT4G02570.4 - [+] show detail - cullin 1
        Distance: 0; Region: intron3 (CDS)
      • AT4G02570.2 - [+] show detail - cullin 1
        Distance: 0; Region: intron3 (CDS)
      • AT4G02570.3 - [+] show detail - cullin 1
        Distance: 0; Region: intron3 (CDS)
      • AT4G02570.1 - [+] show detail - cullin 1
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT7767 - 5-prime edge
    CCTGGGTTTT ATACTTGTTT ATTACCTTAT ATAGCGGTTT GGCTGTTTGT 
    CCTGATACTT ATGATGGGGA ATTTATTTGA TTCTCAGGAC TATCTACAAC
    ATGTGCACCC AGAAACCTCC TCATGATTAC TCACAGCAGC TTTATGACAA
    GTATCGGGAA GCATTTGAGG AATATATTAA CTCAACAGTG AGTCTGATTG
    ATATTTAGTT TCTTTCTTAT AAACTTCTCG TTTTTACTAC CTCTGAATTT
    TAAGATGCCA CTTTTGTGCA TGGTTTCATA TGTCAAGAAG TCCTGTCCCC
    TCTTGGTTTT AAGTTGATTC AAACGGTTTT GAATGTTTGC TCTCTTGTTG
    TCTGTGGTTA GGTTTTGCCT GCGTTGAGGG AGAAGCATGA TGAGTTTATG
    CTGCGGGAGC TATTTAAAAG ATGGTCAAAC CATAAAGTAA TGGTCAGATG
    GCTATCCCGC TTCTTCTACT ACCTTGACCG TTACT

AT4G02560.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
Encodes a nuclear localized protein with similarity to transcriptional regulators. Recessive mutants are late flowering. Expression of LFY is reduced in LD mutants.
Computational Description
luminidependens (LD); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); Has 1085 Blast hits to 929 proteins in 132 species: Archae - 0; Bacteria - 17; Metazoa - 322; Fungi - 72; Plants - 440; Viruses - 0; Other Eukaryotes - 234 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02560.2

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
Encodes a nuclear localized protein with similarity to transcriptional regulators. Recessive mutants are late flowering. Expression of LFY is reduced in LD mutants.
Computational Description
luminidependens (LD); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287).
Link
InterPro Scan - TAIR

AT4G02570.1

Model type
Protein coding
Short Description
cullin 1
Curator Summary
Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.
Computational Description
cullin 1 (CUL1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin homology (InterPro:IPR016158), Cullin, N-terminal (InterPro:IPR001373), Cullin, conserved site (InterPro:IPR016157), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 2 (TAIR:AT1G02980.1); Has 2243 Blast hits to 2199 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 958; Fungi - 500; Plants - 373; Viruses - 0; Other Eukaryotes - 412 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02570.2

Model type
Protein coding
Short Description
cullin 1
Curator Summary
Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.
Computational Description
cullin 1 (CUL1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin homology (InterPro:IPR016158), Cullin, N-terminal (InterPro:IPR001373), Cullin, conserved site (InterPro:IPR016157), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 2 (TAIR:AT1G02980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02570.3

Model type
Protein coding
Short Description
cullin 1
Curator Summary
Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.
Computational Description
cullin 1 (CUL1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin homology (InterPro:IPR016158), Cullin, N-terminal (InterPro:IPR001373), Cullin, conserved site (InterPro:IPR016157), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 2 (TAIR:AT1G02980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02570.4

Model type
Protein coding
Short Description
cullin 1
Curator Summary
Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.
Computational Description
cullin 1 (CUL1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin, conserved site (InterPro:IPR016157), Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 2 (TAIR:AT1G02980.1).
Link
InterPro Scan - TAIR