GT7732

CSHL Arabidopsis genetrap mutant lines

Original: GT7732

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT7732

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18478977 [Map]; Strand: c
      • AT4G39830.1 - [+] show detail - Cupredoxin superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT7732 - 5-prime edge 
    TGTTTGTGTG GTATGATCAA TTCATATATA CATAACGATA GATCATTGCA 
    TGTCATGTGT TTACAGATAA CTCATTTGTC TTTTGGAGAA AAACTGGAGA 
    GAAAACGCGT TTCACTTTTC TACGATTTAG TGATAATTTC TAATAATAAT 
    ACATCGACTT TTATTAGCAA AGTAAAATTG TAGTATATGA TTCTGTGTAC 
    CTCATGTGTT TTGTAAGTGA TAAAAGTCAA GTATGTTCGA TGCTTCTACA 
    CTGCTTTTCC TTTTTCCGTA GTAAAACCAC ATTATATTTT GATGTTTGAT 
    TGTAAGATTT TTAAAGCCTA AACTATTGTT AAAACAAAAT ACTTAATCAA 
    ATCATTAAAT GAATAATAGG TTTTACGGTT TGAACTAGCT AGTTAGTCAC 
    TCATTTCATT TTTTAAGAAT CTCGAATTTA AATACCTACA ATATAAAATT 
    GAATAATTTA CATGTTCATA TCCCTNTAGT TATCCGAAAT AAATATGGGT 
    TTAGGTCTGA AATTCTTTAG TTAATTAAAA AGACTTACTT ATTGCAGTAC 
    ATTCCACATA GACTTTTAAT TTGGTCAAGT CTTAGCTCAG GGTCAATGGT 
    AAGAATCGAG AAAAAATCTC TTGGACCAAG TCAGAGCTTA ATTTTTT

AT4G39830.1

Model type
Protein coding
Short Description
Cupredoxin superfamily protein
Computational Description
Cupredoxin superfamily protein; FUNCTIONS IN: oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117), L-ascorbate oxidase, plants (InterPro:IPR017760); BEST Arabidopsis thaliana protein match is: Plant L-ascorbate oxidase (TAIR:AT5G21100.1); Has 10346 Blast hits to 8779 proteins in 1558 species: Archae - 67; Bacteria - 4905; Metazoa - 456; Fungi - 3230; Plants - 1293; Viruses - 0; Other Eukaryotes - 395 (source: NCBI BLink).
Link
InterPro Scan - TAIR