GT7428

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

small plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT7428

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 2; Position: 18013196 [Map]; Strand: w
- AT2G43360.1 - [+] show detail - Radical SAM superfamily protein
  Distance: 0; Region: exon1 (5UTR)
- AT2G43370.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -174; Region: promoter

TGGCTGCTTT GGGTTAGGTG AATCACTCAC TGAAGAGTGA AAAGCTCTAG 
CACAAACCAA ACACCAAATC TCATTTCTTC TTCTTCTTCT TTTTCCACAT 
TTTCTGATTA GCAGATCAAA TGATGCTTGT TCGATCTGTA TTTCGATCTC 
AGTTGCGACC CTCTGTCTCG GGTGGTCTGC AATCTGCTTC TTGCTATTCT 
TCATTATCTG CTGCTTCAGC TGAAGCTGAG AGGACTATCA GAGAAGGTCC 
CAGAAACGAT TGGAGTAGAG ATGAAATCAA GTCTGTTTAT GATTCTCCTC 
TTCTTGACCT CCTCTTCCAT GGAGTAATTT ACCCTTCTT

5 prime edge [+] show sequence

Chromosome: 2; Position: 18013331 [Map]; Strand: w
- AT2G43360.1 - [+] show detail - Radical SAM superfamily protein
  Distance: -93; Region: promoter
- AT2G43370.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -39; Region: promoter

TCCGCCTTCG TGTGGGACCT ACGAGAATAT CATATATCTT TAACTGGGCT 
GTAATAAGCC CAATTTATAT GTTGGGCTTT TTAATAGTAA TCAATTCAAA 
CGACGACGTT ATTCTTTATT TCCTTAAACA GCCGGAGCCG CCGTGAGAGA 
GAGAGAGTCG GGGGAGAAGA AATGAGCGGC GGAGGAAACA ACGTCGTGAA 
CAAAGTGTTC TACGCGACGT CGTATCATCC GATTCAAGCC GGAAGTATCG 
ACGGAACTGA TGTTGCTCCA CATGATAACG GCGTCCGTCG AGCTCTTCTC 
TGTTATAACG CTGGCTTATG TATGTATACT CTCTCGTTCT CTCTGCTCCT 
CTTTTCACTT TTATCGTTTG GTTTCTGAAT TCAAATACAT TGATTTGGGT 
TGTTTTGAAA GATGATCCTT CTGGTGATTC GAAGGCTGTT GGAGATCCTT 
ACTGTACTCT CTTCGTGGGT CGTCTCTCTC ATCACACTAC GGAGGATACA 
CTTCGAGAGG TTAATGATTG AAATTTCACT TAGTTTTTGA TTTTCGTGTA 
GACTATGTTT TGAATATGAT TATAAAAGTT TCTTCTTCGT

AT2G43360.1

Model type: Protein coding
Short Description: Radical SAM superfamily protein
Curator Summary: Catalyzes the conversion of dethiobiotin to biotin.
Computational Description: BIOTIN AUXOTROPH 2 (BIO2); CONTAINS InterPro DOMAIN/s: Biotin/thiamin synthesis-associated protein (InterPro:IPR010722), Aldolase-type TIM barrel (InterPro:IPR013785), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Radical SAM (InterPro:IPR007197), Biotin synthase (InterPro:IPR002684); Has 5366 Blast hits to 5366 proteins in 2012 species: Archae - 191; Bacteria - 4453; Metazoa - 6; Fungi - 120; Plants - 75; Viruses - 0; Other Eukaryotes - 521 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G43370.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U1 small nuclear ribonucleoprotein-70K (TAIR:AT3G50670.1); Has 272 Blast hits to 272 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 270; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR