GT7115

CSHL Arabidopsis genetrap mutant lines

Original: GT7115

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT7115

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2727652 [Map]; Strand: w
      • AT3G08950.1 - [+] show detail - electron transport SCO1/SenC family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT7115 - 3-prime edge
    TGTAACGACC GTTTTCAGCT CTAATCAGAA ACTCCGATCC TCTAGATTTC 
    TCATTTTTCT CCGAAGATTT TGTTTCCGGT TTACCTGAGT CATGTTTCGA
    GGTAATATCA GAAGCAGAAG TACTCAGCAA ACATCTCTGA TCCATTTTCA
    GCATTTCGAT TCCACAGTTA AGTGAAAAAA ACTGCAAAAG GAAGATAGCA
    ATTAGAGAGC TCAAAACAAA GAGAATTAGA AAATGAATTC AGATGAGGAG
    AAGAAATGAC GAACCGATCG AGGAAGAGAG AAATCTCCAT GACGAAGCGC
    GTCGGAAATG CACGCCGGAG AAGGAGACGA TGCCGATATT TTATTGCTGG
    AGACGCGAAT CCGACGAAAA AGTTGAACGG AACGAAGACG GCTTGCAGTT
    CTACATAGAG CAGACGCCAT TGACGACCAA TTTTTCTCTG AAGTTCACAA
    ATTCGCTGAT TTCTTTCCT
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2727753 [Map]; Strand: w
      • AT3G08950.1 - [+] show detail - electron transport SCO1/SenC family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT7115 - 5-prime edge
    TGGTGGTTCA GATCATAAAA ACGAGCGTGC TTCTGGAAAA GACTTCGTGG 
    AGGGGTAACT GTTTCCATGA ACAAAGTCTC TCTGATTGAA TTGCAGAATT
    AAATGGTTGT TTTGGTCTAA TATTTGATTG GAGAGTTTTT GGTTTGATTG
    CAGCCGGTTT CATGGATGAG CTTTTTCTTG CTGTTTGCTA CTGGAGCTGG
    ATTGGTCTAC TATTATGACA CACAAAAGAA ACGTCATATC GAAGGTACTC
    ATCTATGGTG AGTTTCATTT TTTGAACATA TCTACAAAGT AACACAAACT
    TGATCATGTA GAGTATAGAC TACTATTACA TGATTTGGCT ACATAGCTCC
    CATTTTCTAG TTTGGATTGT GTAATAACAG TAAAACTGAG GTGCTAGGAT
    TTCGACCGAG CTCTTAATAT CTTGCATCAT GTCGTACATT TTGCTAATGG
    AGTTCTGAAA TGTCTAATTG AATACATTGT TTGTAGCTTA

AT3G08950.1

Model type
Protein coding
Short Description
electron transport SCO1/SenC family protein
Curator Summary
Encodes HCC1, homologue of the copper chaperone SCO1 (synthesis of cytochrome c oxidase 1) from the yeast Saccharomyces cerevisiae. SCO1 encodes a mitochondrial protein that is essential for the correct assembly of complex IV in the respiratory chain. HCC1 is localized in the mitochondrion. A chimeric yeast Sco1-Arabidopsis HCC1 protein complements yeast Sco1 activity. Embryos of hcc1 mutants became arrested at various developmental stages, mostly at the heart stage.
Computational Description
electron transport SCO1/SenC family protein; FUNCTIONS IN: copper ion binding; INVOLVED IN: copper ion transport, respiratory chain complex IV assembly, cellular copper ion homeostasis, cell redox homeostasis; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Synthesis of cytochrome c oxidase, Sco1/Sco2 (InterPro:IPR017276), Copper chaperone SCO1/SenC (InterPro:IPR003782), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT4G39740.1); Has 4072 Blast hits to 4072 proteins in 1098 species: Archae - 11; Bacteria - 2439; Metazoa - 165; Fungi - 147; Plants - 84; Viruses - 0; Other Eukaryotes - 1226 (source: NCBI BLink).
Link
InterPro Scan - TAIR