GT6978

CSHL Arabidopsis genetrap mutant lines

Original: GT6978

Phenotypes

Morphological phenotypes

Original description

  • tiny plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT6978

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11767911 [Map]; Strand: c
      • AT4G22240.1 - [+] show detail - Plastid-lipid associated protein PAP / fibrillin family protein
        Distance: -607; Region: promoter
      • AT4G22250.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT6978 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGTCG TCATCAACGA 
    TTTTCTCCGC CGTCTCTTCC AACAATCTCA TCAACGAAAC TCTCCTCGGC 
    GTCATATCTG CCTCCGCCTC CGTCGATTCT CCACGGTTAT ACCTCTCCGC 
    TTCTAACGCC GTCGCGAGAT TCATACCCGT ACCCGATCCA TGATCCGATT 
    CGAGAACGAG TCCGGTTTCA ATTTGTAATT C

AT4G22240.1

Model type
Protein coding
Short Description
Plastid-lipid associated protein PAP / fibrillin family protein
Computational Description
Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: fruit, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: fibrillin (TAIR:AT4G04020.1); Has 461 Blast hits to 460 proteins in 78 species: Archae - 0; Bacteria - 75; Metazoa - 0; Fungi - 0; Plants - 360; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G22250.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G03965.1); Has 910 Blast hits to 910 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 334; Fungi - 67; Plants - 314; Viruses - 43; Other Eukaryotes - 152 (source: NCBI BLink).
Link
InterPro Scan - TAIR