GT6682

CSHL Arabidopsis genetrap mutant lines

Original: GT6682

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6682

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2602794 [Map]; Strand: c
      • AT4G05076.1 - [+] show detail - pseudogene, expressed protein, similar to putative non-LTR retroelement rever...
        Distance: -231; Region: promoter
      • AT4G05080.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: -207; Region: promoter
    Flanking Genome Sequence: GT6682 - 3-prime edge 
    ATACTTTCAC ACACGGGAAT TTCCATTAGT GAGGAAACAT GTTCTTTTTA 
    TTTTTTGTAT ATTTAACATT TCCCGAAGAT TATTTATCTT AGTGAAAGTT 
    ATTAAAAAGG GCCCGAGACT TGTTTTAAGT CAATTACTAC CCAAAAAAAT 
    AAAATAATAA CTTGTGGAAA GCTACATTAA TAATCGGAGA AAAGAGTGGG 
    CTAGCTAAAG AGTTGAAAAC CCTAATTTCT ACATACTAAG AAAATAATGA 
    CGATGATGTT CGATCTTACG CAGGATTTGG TGGAAGAGAT ATTGTCTAGG 
    GTTCCGATAA CTTCCCTAGG AACAGTGAGA TCCACTTGCA AAGGATGGAA 
    CGCTTTATCC AAAGATCGGA TTTTATGTAA AGCAAAACCA AAACAGCAGT 
    TTCATCAAGG GTTCATGCTG TCTGATTATA GGCTTCGTTC AATG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2597008 [Map]; Strand: c
      • AT4G05071.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -2711; Region: intergenic
      • AT4G05073.1 - [+] show detail - transposable element gene
        Distance: 650; Region: intergenic
    Flanking Genome Sequence: GT6682 - 5-prime edge 
    CTCTTTCTGT ATTTAGTTTT TATTTTGGAT CAAAACTTGC TCTATATTTC 
    TATTATTAAC ATTCTACGAC ACAGCAACCA CATGAACAAA GCGCAATTGC 
    TTCGAAATCT GGACAAACAG GTTCGAAATC ACATCTCTTC TATACGGGAA 
    CATGGAGATA AAAGATGTAA TAGATATATG GAAGCTTGGT TTGCTTAGAG 
    ACAAAGAAAA TGGTGGAGTA GTTTTGATAT GCATAATAAC ATAAAATCAT 
    TTACTAAAAC GTTGCACTCT GTTTGAAAAA AAAAATCGAA TGGATTTTAC 
    ATTTTATTTA CAAAAAAACG CTGAGCTACA CTAAAATGGA AGTGGGGGAA 
    AAATCGACAT TGGGGCATTT AAAAATAGAT AATTGGC

AT4G05071.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G05073.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 5.1e-300 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G05076.1

Model type
Pseudogene
Curator Summary
pseudogene of unknown protein
Computational Description
pseudogene, expressed protein, similar to putative non-LTR retroelement reverse transcriptase
Link
InterPro Scan - TAIR

AT4G05080.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G19880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR