GT6634

CSHL Arabidopsis genetrap mutant lines

Original: GT6634

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6634

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT6634 - 3-prime edge
    AATTCTCACT ACATATGGTA CTGTCAACTG GACTAGGTAA GCATG
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1521050 [Map]; Strand: c
      • AT3G05330.1 - [+] show detail - cyclin family
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT6634 - 5-prime edge
    GATGGTGGTG CCTCCTCTCA ACTCAGATCT TCTCAAGGAA ACGATCAACA 
    AGGTATTTTA TCCAATTTAA TACAAAGATT AGCATAAAGT TTACTGCTTT
    AATTTTATCA GAATTTGCAA ACGCTCCAGT TCTAAGGCTC CTTCCCACTA
    TGTTTGAAGC TTTACTTAGT AACAAATTAA TAAAATTGTC GATTTTCTGA
    CCCCAATTTA AAGATCTTTG TTTTATTGGA TTATAATAAG TAATTGGTTT
    TATATTCAAT TGATGTGTTC TTGTTGGGTT TCAAGAGGAT TCTTATGCTA
    CATATGGTAC TGTCAACTGG ACTAGGTAAG CATGAGT

AT3G05330.1

Model type
Protein coding
Short Description
cyclin family
Curator Summary
Encodes a protein with moderate sequence similarity to the maize microtubule-binding protein TANGLED1. A single base-pair deletion (-A) at position Chr3:1519176 in Columbia relative to the Landsberg erecta and Achkarren-2 ecotype (see ESTs DR378436 and CB26450) introduces a frame-shift and premature termination codon. The protein encoded from the Columbia gene is truncated by 29 amino acids relative to the Landsberg erecta and Achkarren-2 encoded proteins. Involved in the identification of the division plane during mitosis amd cytokinesis
Computational Description
TANGLED (ATN); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytokinesis, initiation of separation, phragmoplast assembly; LOCATED IN: microtubule associated complex, preprophase band; EXPRESSED IN: cultured cell; Has 705 Blast hits to 473 proteins in 108 species: Archae - 0; Bacteria - 3; Metazoa - 504; Fungi - 31; Plants - 75; Viruses - 28; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR