GT6580

CSHL Arabidopsis genetrap mutant lines

Original: GT6580

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6580

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4695613 [Map]; Strand: w
      • AT5G14565.1 - [+] show detail - MIR398C; miRNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT5G14570.1 - [+] show detail - high affinity nitrate transporter 2.7
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT6580 - 3-prime edge 
    CGTTACCGAC CGTTTTCATC CCTATTTATA ATGACAGATC GTTAGGAGTG 
    GTGGCGGGAA TTACGGGAAG CGGCGGTACG GTTGGTGCGG TGGTGACGCA 
    GTTTCTGTTG TTTTCCGGTG ATGATGTTCG AAAACAGAGA AGCATTTCAC 
    TTATGGGTTT GATGACTTTT GTGTTTGCTC TTTCTGTTAC ATCAATTTAC 
    TTTCCACAAT GGGGTGGAAT GTGTTGTGGG CCTTCGTCAT CTTCCGAAGA 
    AGAAGATATT TCTCGGGGAC TCCTTGTANA AGACGAAGAT GAAGAAGGTG 
    AAGTGGTTAG TGGTAGTCTA CGTCCCGTTT GTTGATGCCG CATTTGAACT 
    GCTGGCCCAT TTGGCCAAAG CAAAAGCAAT AGCAAAACAT TAGTATACTA 
    CTAATAAGGA CGAATTTGCT GTTATC

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT6580 - 5-prime edge 
    ATATTAGCGT GTAACAATAG GGAATGATAT GGTGAATTTA TTTTTTAATG 
    GTCAATGCTT AAAAGGAATA AAATTTCGAG GGCTTAAAAA GGAAAATAAT 
    ATATTATTTT GGTACCAAAT CGCTTCCTGG AACGAATTGG TTTCCATTTC 
    AAATTAAATT GACTAAATTA CCCTTTTGAC AAATTTTTAA AAGCTCATAG 
    TTACTAGTCT TTTGGTTTTC TTCATCTCAC TC

AT5G14565.1

Model type
miRNA
Short Description
MIR398C; miRNA
Curator Summary
Encodes a microRNA that targets both CSD and CytC oxidase family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGUGUUCUCAGGUCACCCCUG. Down-regulated by biotic and abiotic stress.
Link
InterPro Scan - TAIR

AT5G14570.1

Model type
Protein coding
Short Description
high affinity nitrate transporter 2.7
Curator Summary
Encodes ATNRT2.7, a nitrate transporter that controls nitrate content in seeds. Expression is detected in reproductive organs and peaks in seeds. Localized to the vacuolar membrane.
Computational Description
high affinity nitrate transporter 2.7 (NRT2.7); CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter2.5 (TAIR:AT1G12940.1); Has 7777 Blast hits to 7739 proteins in 1625 species: Archae - 132; Bacteria - 6743; Metazoa - 43; Fungi - 326; Plants - 261; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).
Link
InterPro Scan - TAIR