GT5371

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

small plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT5371

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 2054911 [Map]; Strand: c
- AT3G06590.2 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT3G06590.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  Distance: 0; Region: exon1 (CDS)

ATCTTAGCTA ATCGGATCAA ACTGAAATTT CGTAAACAGA GACGTCCTAA 
AGCTACGGTG GCGATTCCGG CCATGACTAC GGTGGTTAGT AGCAGCAGCA 
ACAGATCGAG AAAACGGAGA GTGTCGGTGT TGAGATTGAA TAAGAAGAGT 
ATACCGGATG TTAACCGGAA AATACGTGTT CTAGGCCGGT TAGTTCCCGG 
TTGCGGTAAA CAATCCGTAC CGGTGATTCT ACAAGAAGCA ACTGATTATA 
TTCAGGCTCT GGAGATGCAA GTGAGAGCCA TGAACTCTTT AGTTCAGCTT 
CTCTCCTCCT ACGGCTCAGC TCCTCCACCG ATTTGATGAG GTTAAAATCG 
TCTTTTAAAT TCTACCGTCT CTCGATCTTT

AT3G06590.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT3G17100.2); Has 284 Blast hits to 282 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 282; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G06590.2

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT3G17100.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR