GT5075

CSHL Arabidopsis genetrap mutant lines

Original: GT5075

Phenotypes

Morphological phenotypes

Original description

  • purple, early arrest seedlings
Anatomical entity
/structure development stage		 Phenotypes
seedling (PO:0008037)
  • purple (PATO:0000951)

Original: GT5075

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT5075 - 5-prime edge 
    TCTAACCATG AATTCTAAAT CCTCCAAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14445846 [Map]; Strand: c
      • AT2G34210.1 - [+] show detail - Transcription elongation factor Spt5
        Distance: -92; Region: promoter
    Flanking Genome Sequence: GT5075 - 5-prime edge 
    AGGGTTCCGA TTAAAAATAC CCAAAATCTA AAACATCGCG AAATATCCTC 
    GCTCTTACTC GAGTCGAGAA AAACCCTAAA ACCCCTGAAG AATCGAAAGG 
    AGCAGACTTT TTCGCTTCTC GCTAAATTGC AAATTCTAAC GCATGAAATT 
    TTATCAAATT GTGAATTGCC GCTTACTCAG TGTACTTATA TAGGATGTGG 
    TATATTTTAT ATTCCCATTT TGCCCTTTCT TTAATTTAAC CCAGTCATGG 
    TTCACTAAGC ATTGATTTCG GTTTACCAGT TTCTAACCAT AAATTCTAAA 
    TCCTCCAATA AATAAACAAC CATGACCAAG ACAAGCCAAT TCTCATATGC 
    GTGGTTTCTG CCACGGGCAT GGAATCGGTC TTTTGATCAA ACAATGGACC 
    AACCATAAAC TTTGCCGCAT ACAAATCATA ATTCTGATCC AACATAAACA 
    TACTAAGCTA AAGTCGACAA AGCTAAGTTT TTTTTTTTAA ATTTTAAAAT 
    TTAATTT

AT2G34210.1

Model type
Protein coding
Short Description
Transcription elongation factor Spt5
Computational Description
Transcription elongation factor Spt5; FUNCTIONS IN: transcription elongation regulator activity, structural constituent of ribosome, transcription initiation factor activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter, translation, positive regulation of RNA elongation from RNA polymerase II promoter; LOCATED IN: ribosome, intracellular; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Transcription antitermination protein, NusG, N-terminal (InterPro:IPR006645), Transcription elongation factor Spt5 (InterPro:IPR017071), KOW (InterPro:IPR005824), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), Transcription elongation factor Spt5, NGN domain (InterPro:IPR005100); BEST Arabidopsis thaliana protein match is: global transcription factor group A2 (TAIR:AT4G08350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR