GT4868

CSHL Arabidopsis genetrap mutant lines

Original: GT4868

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT4868

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2128634 [Map]; Strand: c
      • AT4G04350.1 - [+] show detail - tRNA synthetase class I (I, L, M and V) family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT4868 - 5-prime edge
    CAAACCACAA AACACACACA AAAATTTCAT CTTTTCCACA AAACCCAAAA 
    TCTGAAAACC TATCATCTAT TCAAAATCCT AACCAAGGAT GCTACTGAAA
    TCAATGGAAA CTTCTCAAAA CCACAAAGTT CATTTCTTTA AGCTGGAATA
    GCCAAATCTG TGAACTTTCT ACATAATAAG TATTAAAAGG AAGAGACCTT
    GGATATGGAA ACATGTCGAG GACGTAGAAC TTAGGTTTCG AAGTATCAAC
    ATCGTCTGGT GTCCGGAAAA TTCGGTTATC TTCCCAATAA CGTTGCCACT
    TGGGTTCAAT TTCGTGAAAT GGATAGACCC TTTTCAATTC AATCGATGTA
    GTCGCCGTTT CCGACACCAA AGCTTCTTTT TTGCTACCAT GAGTCTCCGT
    CGTTGAGCTC CTGACTCCGC CGCGATAAGA GCGGCGCCAA CGGAAAGGGA
    GACATGAAAA GGGCCGCTTT

AT4G04350.1

Model type
Protein coding
Short Description
tRNA synthetase class I (I, L, M and V) family protein
Computational Description
EMBRYO DEFECTIVE 2369 (EMB2369); FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, leucine-tRNA ligase activity, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial (InterPro:IPR002302), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (I, L, M and V) family protein (TAIR:AT5G49030.1); Has 40727 Blast hits to 36917 proteins in 3154 species: Archae - 1372; Bacteria - 23600; Metazoa - 846; Fungi - 790; Plants - 334; Viruses - 3; Other Eukaryotes - 13782 (source: NCBI BLink).
Link
InterPro Scan - TAIR