GT4866

CSHL Arabidopsis genetrap mutant lines

Original: GT4866

Phenotypes

Morphological phenotypes

Original description

  • small plants
Anatomical entity
/structure development stage
Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT4866

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5723891 [Map]; Strand: w
      • AT4G08920.1 - [+] show detail - cryptochrome 1
        Distance: -212; Region: promoter
    Flanking Genome Sequence: GT4866 - 3-prime edge
    ATTTGCATTA ATTTCTCTTT TAATTTATTT ATTGTTTAGG TTACAGTTTG 
    AAAATATATT TATCTCTTAT TAAATTATAA TTGTTATTTA TTTTTGG

AT4G08920.1

Model type
Protein coding
Short Description
cryptochrome 1
Curator Summary
Encodes CRY1, a flavin-type blue-light photoreceptor with ATP binding and autophosphorylation activity. Functions in perception of blue / green ratio of light. The photoreceptor may be involved in electron transport. Mutant phenotype displays a blue light-dependent inhibition of hypocotyl elongation. Photoreceptor activity requires light-induced homodimerisation of the N-terminal CNT1 domains of CRY1. Involved in blue-light induced stomatal opening. The C-terminal domain of the protein undergoes a light dependent conformational change. Also involved in response to circadian rhythm. Mutants exhibit long hypocotyl under blue light and are out of phase in their response to circadian rhythm. CRY1 is present in the nucleus and cytoplasm. Different subcellular pools of CRY1 have different functions during photomorphogenesis of Arabidopsis seedlings.
Computational Description
cryptochrome 1 (CRY1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), Cryptochrome C-terminal (InterPro:IPR020978), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 2 (TAIR:AT1G04400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR