GT4843

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

small plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT4843

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 11022414 [Map]; Strand: w
  - AT5G29000.1 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon8 (CDS)
  - AT5G29000.2 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon7 (CDS)
  - AT5G29000.3 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon8 (CDS)
Flanking Genome Sequence: GT4843 - 3-prime edge
```
GCTCTTCTTC TGAAGCATCA GCAAAGCAAT GCAATGGTTC ATTTGCAGAA 
GTTGAAGTTG GTCTTGAGAC ACTAACAGGG GACCAAAATG AATCTGCTTC 
AGCATCAAGG AAACGTGTCA GAGAAGATTA AAGCATGTTT AATTTGATCT 
CGTTTGACGA AACATGTTTG TTGGGAATTA ATTGTGGAAA CCAACTCCAG 
TTTTGTTAAA AGAATCTGTT TCTTTCTTAG CTCTGTATTG TTCTAGTTTA 
GAAGCAGTTG ATTTGGCCTT GCATGGCTGC AACACTTAAC TAAAG
```
5 prime edge [+] show sequence
1. Chromosome: 5; Position: 11022634 [Map]; Strand: w
  - AT5G29000.1 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: intron7 (CDS)
  - AT5G29000.2 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: intron6 (CDS)
  - AT5G29000.3 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: intron7 (CDS)
Flanking Genome Sequence: GT4843 - 5-prime edge
```
ATATGGTTTA GACAAAATCA GATGATACTC ATGATATTCA CAACTACTAC 
TCTATCTAAG TTCGAAATCA GGTAAAGAAG GATAGTTTTT TAGCAGTTAG 
GCATGTAAAA TCATTACCTC GAGCTGCTCG TGGAGACGTT TCTGCACTTC 
CATTTGTAAC CGTAGAGCTT GTGTGATCTC AACGCTCCTG GAAAAGAAAT 
AGTAACATAA TCATCTAGCA AAATATACAT ACAAGAATAT CTGAAGAATA 
CGAAGAAAGA TTACTGGTTT GTTATGCAGT CAGAAGACTG AAGATTCTTA 
C
```

AT5G29000.1

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Computational Description: Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.2); Has 1716 Blast hits to 1701 proteins in 83 species: Archae - 0; Bacteria - 6; Metazoa - 10; Fungi - 10; Plants - 1661; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G29000.2

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Computational Description: Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1716 Blast hits to 1701 proteins in 83 species: Archae - 0; Bacteria - 6; Metazoa - 10; Fungi - 10; Plants - 1661; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G29000.3

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Computational Description: Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.2); Has 1716 Blast hits to 1701 proteins in 83 species: Archae - 0; Bacteria - 6; Metazoa - 10; Fungi - 10; Plants - 1661; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link: InterPro Scan - TAIR