GT3726

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal; semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT3726

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 2; Position: 19504154 [Map]; Strand: w
- AT2G47520.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
  Distance: -585; Region: promoter
- AT2G47530.1 - [+] show detail - Pollen Ole e 1 allergen and extensin family protein
  Distance: -66; Region: promoter

TCGTCTGTTG TTGGTTGTTT AAGGTCTGAT CACAAGACAT GGCCTCCTTT 
ATATATGTGG AACACAATGT CGACCGAAGT ATCTTAAGAT TATGTAGGAC 
AAGTGTCAAC TACATGTTGG CCGGAAGAGA AGAGACATAA TTGGGTGCAC 
GTTTAAATTT TTATATTTCC CCACCAAAAC CTAATAATAT TGATCGAGAA 
ATGTTTTGAT AATTATTACT CATCACACTA CACCAAGCTA GGATCCGAAT 
TGAGAAGGAA GGAATTACTG TTTTGTGGTT AATTCTTGAG TGAAGTATTT 
ATAAATACGT ATTTACATGC ATGATTAGAT AAATTAACTA CAACAAATAG 
AAGAATTTGG TAGGAATTAA TATTACGCCA TGTAATATAG TATTTGATGT 
GGGAGTAGAA ATAATTAAGA AAGCGTTATG GTTCAAATGA TAACTGCAAA 
TTCTATGATT AATTAACTTA CTATTATTTA TAAGTTGTTA ATGGT

3 prime edge [+] show sequence
1. Chromosome: 2; Position: 19504184 [Map]; Strand: w
  - AT2G47520.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
    Distance: -615; Region: promoter
  - AT2G47530.1 - [+] show detail - Pollen Ole e 1 allergen and extensin family protein
    Distance: -36; Region: promoter
Flanking Genome Sequence: GT3726 - 3-prime edge
```
GCGCGTGTGG ATGCCATTGT TAGTAGTTGC TCGTCTGTTG TTGGTTGTTT 
AAGGTCTGAT CACAAGACAT GGCCTC
```
5 prime edge [+] show sequence
1. Chromosome: 3; Position: 21783578 [Map]; Strand: c
  - AT3G58940.1 - [+] show detail - F-box/RNI-like superfamily protein
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: GT3726 - 5-prime edge
```
ATGCAAAATC CTAAATTTGG TTTCTACTTC TCCGATGCAT AAGCATGTCT 
TGTCGAACTG AAAGTCTGGG ACTTTCCCCT CTACCTTCCG CTAAATA
```

5 prime edge [+] show sequence

Chromosome: 2; Position: 19504340 [Map]; Strand: w
- AT2G47520.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
  Distance: -771; Region: promoter
- AT2G47530.1 - [+] show detail - Pollen Ole e 1 allergen and extensin family protein
  Distance: 0; Region: exon1 (CDS)

TGGTTGTGGC TACTGCCGAT TACTATGCGC AACGACAACC TTACGTTCCC 
AAACCAACAA CCACCTACAC ATCACCGGTT AAGACTCCAT ACTTGCCAAA 
ATCAAACCCT GACATGGCCA TCGAAGGTTT CATCTTGTGC AAATCTGGCT 
ACAAAACCTA CCCCATCCAA GGTGCAACTA CATTTTCGAT TTCACATTAT 
ATGTGTTACA TCCCATGACA TCTTACCAAA CCGGTGATGT ACTTGACAGG 
GGGCAAGGTT AAGGTTGTGT GTCCTGTCGT GGATTCATAT GGAAAGCTAG 
TGGCTAAGGT TACAATCTCT AGCTACCCAA CGGACTTGAA GGGATACTTC 
TACTTCA

AT2G47520.1

Model type: Protein coding
Short Description: Integrase-type DNA-binding superfamily protein
Curator Summary: encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational Description: HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 (HRE2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive element binding protein (TAIR:AT3G16770.1); Has 6285 Blast hits to 5826 proteins in 255 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6266; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47530.1

Model type: Protein coding
Short Description: Pollen Ole e 1 allergen and extensin family protein
Computational Description: Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: proline-rich protein 1 (TAIR:AT1G54970.1); Has 189 Blast hits to 189 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 189; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G58940.1

Model type: Protein coding
Short Description: F-box/RNI-like superfamily protein
Computational Description: F-box/RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G58930.1); Has 1892 Blast hits to 1858 proteins in 32 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 1882; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link: InterPro Scan - TAIR