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GT24435

CSHL Arabidopsis genetrap mutant lines

Original: GT24435

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24435

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3486235 [Map]; Strand: w
      • AT1G10560.1 - [+] show detail - plant U-box 18
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24435 - 3-prime edge 
    GTTACCGACC GTTTTCATCC CTACGCGCAT GGTTATCGGA TTGCATTAAC 
    AAACCCATAA CCGCAAGCAA CGCGCTACGT TTGGCGGAAT CGCCGTAATC 
    ATCTCCTTTA ACGATATTCA TCAATCTCGG AATCGCATCT GGATTTTCTC 
    CGATCAATCT GCTGTAATCT TCAACGGAAG AGAGATAAAA CAGAGCAGAA 
    GCAGAGTATA GTCTCGTCTC TGTTTTAGCT CCTTCGTTGA GAATCTCTAC 
    AAGTATCTTT AACCCTTCTC CCGCAATCTT AGATTTTCCG GTAACGTGCT 
    TGGAAAGATT CAAGATCCCA GCCATTGCGT TTTCTTGAAT CCTGATATCT 
    ACGGAGCTAA GAAGCTTTAA AAGTGGAGTC ACAGCACCAG CTTTAACCAG 
    ACAAGACCTA TTAAAACTGC TTGTCTTGGT CTGAACACGA ATCTCTCTCA 
    CGGCTCTGTA AATCATCTCT TCACCGCCAT TGATTAACTC TGAAGTGAGA 
    AACTTTGCGA TGAGTTTCCC AGCTCCCTTT GCAGCCAAAC TCTCCGGGAC 
    CACGTCATCG TGACTCTTTC TTCTCCGACT AATCCCCGCC AAAACGATGC 
    CGTTTGTTTT GCAGTGCTTT CGAATCACTT GCCTCACGGA TACTTTATCA 
    ACCAACTC

AT1G10560.1

Model type
Protein coding
Short Description
plant U-box 18
Curator Summary
Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.
Computational Description
plant U-box 18 (PUB18); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G60190.1); Has 3089 Blast hits to 2773 proteins in 228 species: Archae - 0; Bacteria - 22; Metazoa - 252; Fungi - 338; Plants - 2172; Viruses - 3; Other Eukaryotes - 302 (source: NCBI BLink).
Link
InterPro Scan - TAIR