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GT24173

CSHL Arabidopsis genetrap mutant lines

Original: GT24173

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24173

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5061 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon17 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon16 (CDS)
    Flanking Genome Sequence: GT24173 - 5-prime edge 
    CCTGCTTTTG GAGACAAGGC TGCCATCTTG AGCTTGACCC TCTCGCATGT 
    AAGTAAAGTA TTTCTGAATC TGAGTTTATT GGTACTAGCC CTTTCATCAT 
    GTATATTTTC CCCTCTGTCA GCTCGGTTCT CTGTCACAGT AGTAGACAAT 
    GATAACTGTT TTAAGAATCT ACAAGAAAAA AGTTGAACAA GCTAATCGAT 
    GATGCTCTTA ATGCAACAGT ACAGTGATGG TAACGATTCT TTGATATGCA 
    TTTCAGTCCA TTCGAGGTCC ACAGCAACTC TGAAAAGCTT ATATTTGGAA 
    CTCCCCGTTC CATATAAGCT CATATGGATA AGGTCCGTGT AAACTTATTA 
    GCCATTAAAA AAATGCCTTA TTTTAAATTG TGCATGAAAC ATTCAAATTT 
    AGGCATTTGA ATGTACCTGT CTCTCCGTGG GATCCCAAAT TGTTACAATG 
    CCTTCTTTTG GATTGTGCTC TCCTTCATAA CTTAAGCTCA TCAGGCCAAC 
    AAGCCTAATC CTCATGAACG GGGTGACGTT CCTTTCACCT AAACCAGCGT 
    CTTCCAAAGT TTCTGCCACT GATTTTTCCT TCCGCATTTG CTGGGCTGCC 
    TGAGGTTCAA ATTGAAGCAG TTAATTACTG TAATCAATAT ATCAAGAAAA 
    GGAAATTACT ATTCTAC

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR