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GT24166

CSHL Arabidopsis genetrap mutant lines

Original: GT24166

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24166

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16071744 [Map]; Strand: w
      • AT4G33370.1 - [+] show detail - DEA(D/H)-box RNA helicase family protein
        Distance: -339; Region: promoter
      • AT4G33380.2 - [+] show detail - unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen...
        Distance: -58; Region: promoter
      • AT4G33380.1 - [+] show detail - unknown protein; Has 194 Blast hits to 189 proteins in 23 species: Archae - 0...
        Distance: -148; Region: promoter
    Flanking Genome Sequence: GT24166 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCCT AATTTCTTGC AATCGTTATG 
    TAAATACTAC ATCTTTAAAT GTGGTGATAA TCCTATGATT CATGTCATTG 
    CCATTTTTCA ATTCAATATA TGAAAAAAAT GGAAATTAAA TTTTTGAAAA 
    ACTACCTTTT ACCTAGCTCC TTGTCAACAT ACGAATTCTA ATTGAGACTC 
    TCTTCTTGTA GCTTTTCTTT TCTTTGCTTA TAATCAGAAA ACACAACACA 
    CCCGATCATT CCCCAACCCC GGTTTAACCA AAACTCCGTG TCGGTCATAT 
    CTATCTGCGT GATCTTCCTT GAAAGTCGAG AGATCTGCTG ATTAGGGTTT 
    GGATTCGATC TTTGAAAAAG TTGGCGAGTG GATTTTGAAT CATGGAAGTA 
    GATGATGGTT ACGTGGAGTA TGTTCCAGTA GAGGAGCGTC TAGCGCAAAT 
    GAAGCGAAAG GTGGTGGAAG AACCTGGCAA GGTAAAGCTC ACTGAAAAAG 
    CTAAACCTAG CTTACTTGTT CAAGCAACTC AGCTCAAGCG ACATGTACCT 
    TAAGTCAGTG CTACCGAGGC CATTATTTTA CAAGAGAAGG GGATGATGGA 
    GCATTTATCT GACAAGAAAA AGCTTATGTC TGTTGGTGAA TTAGCCAAAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16071832 [Map]; Strand: w
      • AT4G33370.1 - [+] show detail - DEA(D/H)-box RNA helicase family protein
        Distance: -427; Region: promoter
      • AT4G33380.2 - [+] show detail - unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen...
        Distance: 0; Region: exon1 (5UTR)
      • AT4G33380.1 - [+] show detail - unknown protein; Has 194 Blast hits to 189 proteins in 23 species: Archae - 0...
        Distance: -60; Region: promoter
    Flanking Genome Sequence: GT24166 - 5-prime edge 
    AGAATAATAC TACAAAACTT CCTATCTAGT ATAGACGCTG CCAAAGAAAT 
    ACATACGACG TTTTTATCCA CACGCATTGA TGAGATTGGT ATATATCTCT 
    GTCTCTGTCG AGTGAAAAAT AAATTAATAG AGTAATAATT AAAAGCTCTC 
    TTTCTCTATC TCCCACGATT TCCTTTTTCC GCCGGAAGAA GAAGCAAAAA 
    AAAAAAAAAT CGAATCTCTC TTTCAAGTGT TCGATTTAAA GCAAAAGTGT 
    AATTATAATC GGAAGCGAGA TCTTGAAAAA TGGTGGGATG ACGGCGGAGG 
    GAAATGGCGA GGGGAGGAGG AAAATGGACC GGAGGGATCG CCGGAACCGG 
    ATTTCTCTCT TTCAAAAAAA TCACTCTACT TGTTTGCTTT TTCAACATTC 
    TCATTGCTCT CTTTGTTCTT CGCTTTCTCT ATGCTTCAT

AT4G33370.1

Model type
Protein coding
Short Description
DEA(D/H)-box RNA helicase family protein
Computational Description
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, zinc ion binding, ATP-dependent helicase activity, ATP binding, nucleic acid binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), Zinc finger, CCHC-type (InterPro:IPR001878), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD-box protein abstrakt, putative (TAIR:AT5G51280.1); Has 45034 Blast hits to 44312 proteins in 3130 species: Archae - 817; Bacteria - 23057; Metazoa - 6215; Fungi - 4847; Plants - 2647; Viruses - 8; Other Eukaryotes - 7443 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G33380.1

Model type
Protein coding
Computational Description
unknown protein; Has 194 Blast hits to 189 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G33380.2

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube.
Link
InterPro Scan - TAIR