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GT24127

CSHL Arabidopsis genetrap mutant lines

Original: GT24127

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24127

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4783073 [Map]; Strand: c
      • AT3G14330.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -621; Region: promoter
      • AT3G14340.1 - [+] show detail - unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bac...
        Distance: 0; Region: exon1 (CDS)
      • AT3G14350.1 - [+] show detail - STRUBBELIG-receptor family 7
        Distance: 0; Region: exon16 (3UTR)
      • AT3G14350.2 - [+] show detail - STRUBBELIG-receptor family 7
        Distance: 0; Region: exon15 (3UTR)
      • AT3G14350.3 - [+] show detail - STRUBBELIG-receptor family 7
        Distance: 0; Region: exon17 (3UTR)
    Flanking Genome Sequence: GT24127 - 5-prime edge 
    GGTAGCTCCG GCGTCAATGA TTACATGTAA ATTCTTTACC TGATGAGAAC 
    CCCCAAAAAA AAACATAAAA ATTTGCCCTT TTTCCCTTGT CCGCCCAGAA 
    ACTGGAAGGG ACGACAACAA GTGACAACCG AGGACAAACA AAAAAAAAAA 
    AAATCCTTTT TTTCTTTCCG TTTCCTAAAA CTGAGGAGGA AAAAAGAAAA 
    ACAACAACCA CCCTTCCCGC GTTGGAAACT CCCAAGTTTT TTTGTAAATT 
    GTTCCCCAAT TGGAGCTTTT TTTTTAAAAT CCCACAAAAG GAACAAAACC 
    ATTCCCTTTT GGGAGTTCCC AACCAAAAAC GGAATTATTC CATTTGTAAT 
    TTTTTCCCGG GTTGAAAAAA TTTTATGGAA AAAAAGGGGA AAAAGA

AT3G14330.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G46790.1); Has 35559 Blast hits to 14091 proteins in 265 species: Archae - 0; Bacteria - 6; Metazoa - 58; Fungi - 108; Plants - 34937; Viruses - 0; Other Eukaryotes - 450 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14340.1

Model type
Protein coding
Computational Description
unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14350.1

Model type
Protein coding
Short Description
STRUBBELIG-receptor family 7
Computational Description
STRUBBELIG-receptor family 7 (SRF7); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 6 (TAIR:AT1G53730.1); Has 150168 Blast hits to 118851 proteins in 3450 species: Archae - 125; Bacteria - 15425; Metazoa - 44445; Fungi - 8889; Plants - 63588; Viruses - 356; Other Eukaryotes - 17340 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14350.2

Model type
Protein coding
Short Description
STRUBBELIG-receptor family 7
Computational Description
STRUBBELIG-receptor family 7 (SRF7); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 6 (TAIR:AT1G53730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14350.3

Model type
Protein coding
Short Description
STRUBBELIG-receptor family 7
Computational Description
STRUBBELIG-receptor family 7 (SRF7); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 6 (TAIR:AT1G53730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR