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Mutant Lines
GT24100

GT24100

CSHL Arabidopsis genetrap mutant lines

Original: GT24100

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24100

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 3; Position: 20349178 [Map]; Strand: w
- AT3G54920.1 - [+] show detail - Pectin lyase-like superfamily protein
  Distance: 596; Region: intergenic
- AT3G54925.1 - [+] show detail - Plant self-incompatibility protein S1 family
  Distance: 257; Region: intergenic

TACCGACCGT TACCGACCGT TTTCATCCCT AAGTGGAGCT AATTCACAGC 
TACCAGATGA CAAACACCAT CTAAGAAATT AACTTAATGA GCCAATGAAT 
CAATCAATCC AAGTTCTCAA AAGATATGAT AGCAAACAAT CACATCTGAA 
GCCTATGCAG TAACAATTTA CTTGCTCATG ACTTAAAAAG TTAAATCCTT 
CTTTTTATAA TCCGGACTGG AAAAAGAAAC ATGTTTGGCC ATTGCAACCT 
ATATTGTTAA GGCTCTATGT TTTGTTGTTG AATGAACTCA AGATCCTTCA 
TCTGCATTTG AAATAGCTTC TTTAGACAAT CGTTTTGCCA TAACATTCTC 
TTCCTCTCCT CCTTCCGCAA CCCTTGTCGC CTTCTCTCTG ATGATTCTCT 
CTATCTCAAA CTTCTCAACC GATGGAAAAC TCGCTATTAG CATCACTTGA 
AGAAGCTTTT TCATGCGGCA AATTTTGCTA TATTAAAAAT GTGACTTCTA 
CACAACCTTA ATTTTCGTTA GAGGAATAAA AGGTAGTGGA CATAGAAAGA 
TGAGAATGCT ACATCATTGA TGAAACAAAG CATTTGATTG GATGAGACAA 
AGTTCGTCTT TGACGTTGCC TTGACAATCC CATTTTAGTG TTTTGTATTG 
TTGCCAATCC AACT

5 prime edge [+] show sequence

Chromosome: 3; Position: 1824041 [Map]; Strand: w
- AT3G06035.1 - [+] show detail - Glycoprotein membrane precursor GPI-anchored
  Distance: 0; Region: exon1 (CDS)

AGAGTTTCAA GAAGCGAGAT TAACTTCAAC AGGAAAACAA TGGAAGAAAG 
AGAGGATCTT ACCGGAGTCG CTCAGATCAG GGAGAATGAG GTATAGGAGT 
TTGGAGAGAA TGAAAAAAAG TGGAAGCTTG TCAATCGCCA TTGAAGCCGG 
TTTCTAGAGT TCTCAAATGA GATATTGAGG GTGATTGGCT TATAATAATT 
GAGAAAG

AT3G06035.1

Model type: Protein coding
Short Description: Glycoprotein membrane precursor GPI-anchored
Computational Description: Glycoprotein membrane precursor GPI-anchored; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Glycoprotein membrane precursor GPI-anchored (TAIR:AT5G19250.1); Has 86 Blast hits to 85 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G54920.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Curator Summary: Powdery mildew resistant mutant encodes a pectate lyase-like protein
Computational Description: powdery mildew resistant 6 (PMR6); CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G04310.1); Has 2753 Blast hits to 2553 proteins in 415 species: Archae - 3; Bacteria - 1039; Metazoa - 313; Fungi - 409; Plants - 814; Viruses - 7; Other Eukaryotes - 168 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G54925.1

Model type: Protein coding
Short Description: Plant self-incompatibility protein S1 family
Computational Description: Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT3G55254.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR