1. Home
  2. Mutant Lines
  3. GT23326

GT23326

CSHL Arabidopsis genetrap mutant lines

Original: GT23326

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23326

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 4799 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron18 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron17 (CDS)
    Flanking Genome Sequence: GT23326 - 5-prime edge 
    GTACGCAGCG ATATCAAATT CACTGAAGGA CATAATTAGA GATGACAGGG 
    TATAGATTAG CAAAGTGCGG TAAAGAGTGT TTCATAAAAA GCTTGGACTA 
    CTGAGATTAA CCTTGAAAGA GGAATTTCAC CAAGATTTGA CAAAGAGATT 
    GGTTTACGAG GGTTGAAAAA GGGCCTGAAA ACATCATCAG GGAAATTGAA 
    CAAATTAATG AGATAGATTC CAGTGTGTCT ACTAAAGAAA ACCACTTACT 
    GAAAATTTTC AGAATCTTTT GGAGACAAAG GCTGCCATCT TGAGCTTGAC 
    CCTCTCGCAT GTAAGTAAAG TATTTCTGAA TCTGAGTTTA TTGGTACTAG 
    CCCTTTCATC ATGTATATTT TCCCCTCTGT CAGCTCGGTT CTCTGTCACA 
    GTAGTAGACA ATGATAACTG TTTTAAGAAT CTACAAGAAA AAAGTTGAAC 
    AAGCTAATCG ATGATGCTCT TAATGCAACA GTACAGTGAT GGTAACGATT 
    CTTTGATATG CATTTCAGTC CATTCGAGGT CCACAGCAAC TCTGAAAAGC 
    TTATATTTGG AACTCCCCGT TCCATATAAG CTCATATGGA TAAGGTCCGT 
    GTAAACTTAT TAGCCATTAG AAAAATGCCT TATTTTAAAT TGTGCATGAA 
    ACATTCAGAT TTAGGCATTT GAATGTACCT GTCTCTCCGT GGGATCCCAG 
    ATTGTTACAA TGCCTTCTTT TGGATTGTGC TCTCCTTCAT AACTTAAGCT 
    CGTCAGGCCA ACAAGCCTAA TCCTCATGAA CGGGGTGACG TTCCTTTCAC 
    CTAAACCAGC GTCTTCCAGA GTTTCTGCCA CTGATTTTTT CTTCCGCATT 
    TGCTGGGCTG CCTGAGGTT

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR