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GT22985

CSHL Arabidopsis genetrap mutant lines

Original: GT22985

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22985

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21042316 [Map]; Strand: w
      • AT5G51790.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 1722; Region: intergenic
      • AT5G51795.1 - [+] show detail - DNA/RNA-binding protein Kin17, conserved region
        Distance: 767; Region: intergenic
    Flanking Genome Sequence: GT22985 - 5-prime edge 
    TGCTGATTAG TTGGCATACA TATCATTATC CGCATGTACT ACCAAAAAAT 
    ATCCGCTTGT ACTATGGTCA GCTTTCGAAT ATTTATGGTG GTGTACGATT 
    TTACCAAATA TCCTTGAGAA TAAAATCCAC TTGGCGAATA TTAGTCAACG 
    ATTATTTGAC TTTAGAAGTA GTCAAGGTTC TACAGAATTA GCAGTAAATA 
    ACTTTGTTCC TTCACTCATT TTATCATTGG TTTCTTATAG ATTTTTCAAA 
    TTCTATAAAC TTTTTGAATG ATTTATCGAA AATTTTGGGT CTACAACAAC 
    TATGGCGAGA AATGCATAAA CGATCCCATA AGTTAAGTTG TTAGAAATAT 
    TCTAACTTCT AATATTCTCA AAGAGACTAG GTTCTGAACC ATCTATTTTT 
    AGAATTTTTA GTCAATTTTT GTGTGGCTCT TAACCATATT TATAACCAAA 
    AGTTTAGAAC CCATCATGGC TTTTTATTTT TGAACTAGTC CAATGGTAAA 
    ACTTCTAGTA ATACGTTGTT CAAAGAAAGT GAACTGAATA GAGTTAGTAA 
    CATGTATCTC TGGCTTATCA ACTCGCATAA ATAGAATCAA AGTAAACACA 
    GTCCTTATAT GGACATGTTG TAAGTGATGA GAATCAACCA GCAAAGTTCA 
    GAAGTTCATT TGGAGCCAAA ACAGAACATA ATCCAGAAGA TAACCAAATT 
    GAAATCTTGT TTAAATTCTT CGTATATGTG CTGGATTGTG AGAATGAAAC 
    ATGGTAGGGT AAAACCAATA CAAAAATTTG CTGATGTTAG TTAACTCAAT 
    GGACATCATA AAACCTAATT TGGTCTAAAG ATAT

AT5G51790.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G25410.1); Has 302 Blast hits to 302 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 301; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G51795.1

Model type
Protein coding
Short Description
DNA/RNA-binding protein Kin17, conserved region
Computational Description
DNA/RNA-binding protein Kin17, conserved region; CONTAINS InterPro DOMAIN/s: DNA/RNA-binding protein Kin17, conserved region (InterPro:IPR019447); BEST Arabidopsis thaliana protein match is: DNA/RNA-binding protein Kin17, conserved region (TAIR:AT1G55460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR