1. Home
  2. Mutant Lines
  3. GT22556

GT22556

CSHL Arabidopsis genetrap mutant lines

Original: GT22556

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22556

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3534449 [Map]; Strand: c
      • AT3G11280.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: 0; Region: intron1 (5UTR)
      • AT3G11280.2 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G11285.1 - [+] show detail - pre-tRNA
        Distance: -697; Region: promoter
    Flanking Genome Sequence: GT22556 - 5-prime edge 
    GCTTCCATTA TTTCCTTATA TCACAAATCT ATCTTTTAAG CTTCCTCCAC 
    ACATAGAGCA AGAAAATGGA CTTTTTTGAG CTGTGTTTGT AGTTGAAACT 
    TATTCTTCCC TTTTTTTGTT TTTAGGTATG GAGACTCTGC ATCCATTCTC 
    TCACCTACCT ATCTCTGACC ACCGGTTCGT TGTTCAAGAG ATGGTGAGCT 
    TACACAGCTC GAGTAGCGGT AGCTGGACTA AAGAAGAGAA CAAGATGTTC 
    GAACGAGCTC TTGCGATATA CGCTGAAGAC TCGCCTGATC GCTGGTTTAA 
    AGTTGCTTCC ATGATCCCTG GAAAGACTGT TTTTGATGTT ATGAAGCAAT 
    ATAGTAAGCT TGAAGAAGAC GTTTTCGATA TTGAAGCAGG ACGTGTTCCC 
    ATTCCTGGTT ATCCTGCAGC TTCTTCTCCC TTGGGGATTG ACACGGACAT 
    GTGTCGTAAA CGGCCTAGTG GAGCTAGAGG ATCTGATCAA GATCGAAAGA 
    AAGGAGTCCC TTGGACAGAG GAAGAACACA GGTTAAGACA CTCTTTCATC 
    TCTCTCGACT ACTTTCCATA TAANTCACTC TTCCTAGGTT CCTTGCAACG 
    CAAGTCATCC CCTTTTTCTT AGGGTTTTCA ATGGTCTGTT TCTTGTTCAT 
    CT

AT3G11280.1

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Curator Summary
Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G05790.1); Has 1712 Blast hits to 1708 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 4; Plants - 1403; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11280.2

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Curator Summary
Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G05790.1); Has 1712 Blast hits to 1708 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 4; Plants - 1403; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11285.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Arg (anticodon: CCT)
Link
InterPro Scan - TAIR