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GT22508

CSHL Arabidopsis genetrap mutant lines

Original: GT22508

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22508

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 11802263 [Map]; Strand: w
      • AT3G30170.1 - [+] show detail - transposable element gene
        Distance: 5047; Region: intergenic
      • AT3G30180.1 - [+] show detail - brassinosteroid-6-oxidase 2
        Distance: -8474; Region: intergenic
    Flanking Genome Sequence: GT22508 - 5-prime edge
    AACATTTATA TATTCAATTA CTTATATAAT ATACTTCCAT TTTCAGTGAT 
    TTGCAGAGAA ATGCATATAT TATTTAATGG GCGCGTGTGG GTAGACATTC
    CTGCTCTGGT CTCTATCTAA GCACACGTAC GTCTAACTTA TTTATTACTT
    GTATATTTTA TCAATAATTC AATCGTTCAT CTCACTCGAC

AT3G30170.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 3.2e-51 P-value blast match to GB:AAA21566 mudrA of transposon="MuDR" (MuDr-element) (Zea mays)
Link
InterPro Scan - TAIR

AT3G30180.1

Model type
Protein coding
Short Description
brassinosteroid-6-oxidase 2
Curator Summary
Encodes a cytochrome p450 enzyme that catalyzes the last reaction in the production of brassinolide. It is capable of converting 6-deoxocastasterone into castasterone, a C-6 oxidation, as well as the further conversion of castasterone into brassinolide by a Baeyer-Villinger oxidation reaction at C-6, resulting in the formation of an unusual seven-membered lactone ring. The enzyme possesses high affinity for both C28- and C27-Brassinosteroids. The expression of the gene using a CYP85A2 promoter:LUC fusion construct was shown to be under circadian and light control.
Computational Description
brassinosteroid-6-oxidase 2 (BR6OX2); FUNCTIONS IN: monooxygenase activity, oxygen binding; INVOLVED IN: response to light stimulus, circadian rhythm, brassinosteroid biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: brassinosteroid-6-oxidase 1 (TAIR:AT5G38970.1); Has 29372 Blast hits to 29308 proteins in 1622 species: Archae - 48; Bacteria - 4489; Metazoa - 10449; Fungi - 5456; Plants - 7735; Viruses - 3; Other Eukaryotes - 1192 (source: NCBI BLink).
Link
InterPro Scan - TAIR