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GT21817

CSHL Arabidopsis genetrap mutant lines

Original: GT21817

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21817

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17137164 [Map]; Strand: c
      • AT4G36210.3 - [+] show detail - Protein of unknown function (DUF726)
        Distance: 2508; Region: intergenic
      • AT4G36220.1 - [+] show detail - ferulic acid 5-hydroxylase 1
        Distance: 180; Region: intergenic
    Flanking Genome Sequence: GT21817 - 5-prime edge 
    TTAGGGGTGG AAGTTCGCTG GTTAAGCGTA AATCAGAGTT AAAGTTATAA 
    TTTTACAAGC CCAACAAAAG GTCGCAGATT AAAACCACAT GATATTTATA 
    AAAAAAATTC TAAGGTTTTT ATTAGTTTTA TTTTCAGTTT ACTGAGTACT 
    ATTTACTTTT TTATTTTTTG CAAATAAATG TATTTTATCA TATTTATGTT 
    TTTTGTTATA AACTCCAAAC ATACAGGTTT CATTACCAAA AAAAAAGCAA 
    AGTGGTTTTG TTAATTTTGT TTCTCTCTCT TCGACAAAAT TTATTTTATT 
    TTGTTAGTGA TTTTAGGTAT CTTATATCAT TTGTATAGAT TTTTTTTTTC 
    TTTTGAAGGA CCCGCCCCCT TGAAAACTAC GGGAAAATGC ACCAAACCTT 
    TGGGTTTGTG CTAACCCTTA ACACCTTCAA TTACCATTTT TCTAAATGGA 
    TAATGCAAAA TTTAACTTCA AATTTTCAAA ACTATGCTTT TATAAAACCC

AT4G36210.3

Model type
Protein coding
Short Description
Protein of unknown function (DUF726)
Computational Description
Protein of unknown function (DUF726); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF726 (InterPro:IPR007941); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF726) (TAIR:AT2G18100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G36220.1

Model type
Protein coding
Short Description
ferulic acid 5-hydroxylase 1
Curator Summary
encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis.
Computational Description
ferulic acid 5-hydroxylase 1 (FAH1); FUNCTIONS IN: ferulate 5-hydroxylase activity, monooxygenase activity; INVOLVED IN: lignin biosynthetic process, response to UV-B, phenylpropanoid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: Cytochrome P450 superfamily protein (TAIR:AT5G04330.1); Has 34463 Blast hits to 34198 proteins in 1764 species: Archae - 58; Bacteria - 4180; Metazoa - 12146; Fungi - 7203; Plants - 9525; Viruses - 6; Other Eukaryotes - 1345 (source: NCBI BLink).
Link
InterPro Scan - TAIR