Home
Mutant Lines
GT21540

GT21540

CSHL Arabidopsis genetrap mutant lines

Original: GT21540

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21540

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 3533787 [Map]; Strand: w
- AT3G11280.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
  Distance: 0; Region: exon3 (CDS)
- AT3G11280.2 - [+] show detail - Duplicated homeodomain-like superfamily protein
  Distance: 0; Region: exon2 (CDS)

TGCGTTTGTC CTTGGCTCCG GAGAGCTGTC TCTGGTAATA CTTTTGGGCG 
TGGCTCGCCA CTTGCGTTGG CGTCTTTGAC ACCACGAAGT TTCTCGATAT 
GTTTCTCCAA TCTCCTTTAC CGTACTTGAG TAGGCCTAAC AAGAATCTCC 
TGCAAGGAAC AAGAAACAGA GCATTGAAAA CCCTAAGAAA AAGGGGATGA 
CTTGCGTTGC AAGGAACCTA GGAAGAGTGA CTTATATGGA AAGAATTCTG 
TAGAGATGAA AGAGTGTCTT AACCTGTGTT CTTCCTCTGT CCAAGGGACT 
CCTTTCTTTC GATCTTGATC AGATCCTCTA GCTCCACTAG GCCGTTTACG 
ACACATGTCC GTGTCAAACC CCAAGGGAGA AGAAGCTGCA GGATAACCAG 
GAATGGGAAC ACGTCCTGCT TCAATATCGA AAACGTCTTC TTCAAGCTTA 
CTATATTGCT TCATAACATC AAAAACAGTC TTTCCAGGGA TCATGGAAGC 
AACTTTAAAC CAGCGATCAG GCGAGTCTTC AGCGTATATC GCAAGAGCTC 
GTTCGAACAT CTTGTTCTCT TCTTTAGTCC AGCTACCGCT ACTCGAGCTG 
TGTAAGCTCA CCATCTCTTG AACAACGAAC CGGTGGTCAG AAATAGGTAG 
GTGA

AT3G11280.1

Model type: Protein coding
Short Description: Duplicated homeodomain-like superfamily protein
Curator Summary: Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).
Computational Description: Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G05790.1); Has 1712 Blast hits to 1708 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 4; Plants - 1403; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G11280.2

Model type: Protein coding
Short Description: Duplicated homeodomain-like superfamily protein
Curator Summary: Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).
Computational Description: Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G05790.1); Has 1712 Blast hits to 1708 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 4; Plants - 1403; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
Link: InterPro Scan - TAIR