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GT21443

CSHL Arabidopsis genetrap mutant lines

Original: GT21443

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21443

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10703751 [Map]; Strand: c
      • AT4G19680.1 - [+] show detail - iron regulated transporter 2
        Distance: 0; Region: exon1 (CDS)
      • AT4G19680.2 - [+] show detail - iron regulated transporter 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT21443 - 5-prime edge 
    ATAAAGGCTG GTGGTAATGG AGTCAATGGC TAGAGTGACT AGACCGGACA 
    TCATAGCGAC AAAACCCGCA AAAGGGAACT TATGCCACGG ATTATCACTA 
    AGACATTTCG ATGACAACAT CTCGAAAGAG TCAGGCAAGA CGTGCATGAA 
    ACCGGTTCCA AGGATGATTC CAGAAGAAAA ACATTTGACG ATCATGAAAC 
    CATTGCCATC GGGACGGAGG AACGAAATGT AACGGCTGAA AAGAGGAGAG 
    GTCACGCCTA TCAAGCTTGT TGTAAGTATG GCAACAATGG CTACGATTTT 
    GAGTGGTAAA GCCTTAGCTT TGTTGATGCA CGGGTTATCA AAGCCGCTAT 
    CACAATGTTC CGGGGCCGTT GAGATCGCCG GAGATACGGT GAAGGTGAAT 
    AGGATGAGGA GAATGTAGAC GAGCTTGGTA GTAGCCATTA GTATTGAGAT 
    TGTTTTATAA TATATGATGT TTGAATTTTT GATGAGATAA ATTGTTTTGT 
    CTTTGGTTGT CTTATATAGA AGATTTGCCG GCTTGTTCTC GGTGCTGCTG 
    ATTTGGAAAG TCAAGTTATG ACTAAATCAA TAGAAAAAAG ATTACACTAG 
    AGAATCGGAA TCCTGATTTT ATTGATTGTG TATGTACATT ATCAGATAGA 
    AAAAGGTTTT AAATTGTATT TTATATTATC CTATACTTTT GTTTAATCGT

AT4G19680.1

Model type
Protein coding
Short Description
iron regulated transporter 2
Curator Summary
encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone.
Computational Description
iron regulated transporter 2 (IRT2); FUNCTIONS IN: zinc ion transmembrane transporter activity, iron ion transmembrane transporter activity; INVOLVED IN: zinc ion transport, cellular response to iron ion starvation, iron ion transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: root epidermis; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: iron-regulated transporter 1 (TAIR:AT4G19690.2); Has 1381 Blast hits to 1243 proteins in 190 species: Archae - 0; Bacteria - 10; Metazoa - 183; Fungi - 601; Plants - 483; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G19680.2

Model type
Protein coding
Short Description
iron regulated transporter 2
Curator Summary
encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone.
Computational Description
iron regulated transporter 2 (IRT2); FUNCTIONS IN: zinc ion transmembrane transporter activity, iron ion transmembrane transporter activity; INVOLVED IN: zinc ion transport, cellular response to iron ion starvation, iron ion transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: root epidermis; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: iron-regulated transporter 1 (TAIR:AT4G19690.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR