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GT20361

CSHL Arabidopsis genetrap mutant lines

Original: GT20361

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20361

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10424906 [Map]; Strand: c
      • AT5G28469.1 - [+] show detail
        Distance: -8813; Region: intergenic
      • AT5G28470.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -4895; Region: intergenic
    Flanking Genome Sequence: GT20361 - 5-prime edge 
    TGCAGCATAT TATTACAAGG GAGTGATGGG TATACTCCAT GCCGACAATG 
    TAAGAGATGA GTCATCCTTC AACAATATGT CGTTGTCTTT TTTTCTGTGT 
    CTTGATATTC TTTGTACTTT GTAAAGTCAT TTTTACAATG ACATTTTTAG 
    AAAGTAAAGT CATTTTTACA ATGACATTTT TAGAAAATGG GATTGTCATC 
    AGACTTGTGG TAATTGAATA CGATTCTTTC AATAGACATT AGGAACTGGA 
    TGAAGAACTT CGAGCAACGT ACCTCAGATA ATGTTAATAA AAGATTGGTT 
    GGTACAAAGG TGACATTGAT GACAGCAAAA GGGTATATAT TCTTAAGTTG 
    AATGCTTAGT TTAATTTCTT GATTTTTAGG TTGTAGGATA

AT5G28469.1

Model type
Pseudogene
Curator Summary
pseudogene of disease-resistance protein
Link
InterPro Scan - TAIR

AT5G28470.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, pollen tube growth; LOCATED IN: membrane; EXPRESSED IN: petal, leaf whorl, sepal, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1.7 (TAIR:AT1G69870.1); Has 3642 Blast hits to 3525 proteins in 525 species: Archae - 0; Bacteria - 558; Metazoa - 480; Fungi - 335; Plants - 2158; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
Link
InterPro Scan - TAIR